Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0445
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces p...    29   0.74 
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    26   4.0  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    26   5.2  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    26   5.2  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    25   6.9  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   6.9  
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos...    25   9.1  

>SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 396 EASTSTVLRVDVILDIFLSYPPQVSLDNHFSYTKY 292
           EA T T+ ++DV+  + L YP   SL +H    K+
Sbjct: 133 EAVTQTLQQIDVVKRMALYYPKTFSLTDHSGKVKF 167


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 505 SDAAELENHPAQNPSKRTDQQTAGADRDCT 594
           +D  E EN PA N +         + RDCT
Sbjct: 504 TDDVEKENRPASNDANSMPPYIISSSRDCT 533


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 594  GAVPIGTSCLLISPFGRILCRV 529
            G VP+ T   +++P  R LCRV
Sbjct: 1270 GMVPVSTQLAIVNPDTRELCRV 1291


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 355 RHFPVVSTSSLSRQSFQLHK 296
           R  P  S SSLSR +FQ HK
Sbjct: 36  RALPDSSLSSLSRSTFQFHK 55


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 402 LMEASTSTVLRVDVILDIFLS 340
           L EAS ST + +D++LD +L+
Sbjct: 280 LSEASNSTSMNMDILLDSYLT 300


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
 Frame = -2

Query: 450  GYPISALGTYEIPVAMLMEASTSTVLRVD------VILDIFLSYPPQVSLDNHFS 304
            GY ++   TY  P  +L   S   V  +D      VI+++    PP   LDNHFS
Sbjct: 1303 GYSLTGTPTYMAPELILGNPS-ERVGAMDIWSLGCVIVEMATGSPPWPRLDNHFS 1356


>SPAC631.01c |acp2||F-actin capping protein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 268

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 439 YRISGRLVT*MSRSSEERHNQRSDAAELENHPAQNPSKR 555
           YR++  ++  +S  SEE+    S A  L  H  +  S+R
Sbjct: 162 YRLTSTIILFLSSGSEEQSALPSKALNLSGHLTRQTSQR 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,405,551
Number of Sequences: 5004
Number of extensions: 43358
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)