Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0445
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0488 - 3597652-3598761,3599619-3600860                           29   2.3  
04_04_0014 + 22158441-22158669,22158782-22158878,22159264-221594...    28   5.4  
02_05_0876 - 32399066-32399920                                         28   7.1  

>01_01_0488 - 3597652-3598761,3599619-3600860
          Length = 783

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 422 YVPKADIGYPAGLLPECPGVQKNATISARMLPNLKITLHKILPNGLIS 565
           YV  A  GY  GL P  PG+     ++ R+ P L+ T+  +  + +++
Sbjct: 331 YVWHALCGYWGGLRPGAPGLPPAKVVAPRLSPGLQRTMEDLAVDKIVN 378


>04_04_0014 +
           22158441-22158669,22158782-22158878,22159264-22159461,
           22159907-22160141,22160383-22160710,22160798-22161068,
           22161169-22161424,22161508-22161964,22162096-22162286
          Length = 753

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 421 ICS*SGYRISGRLVT*MSRSSEER--HNQRSDAAELENHPAQNPSKRTDQQTAGAD 582
           +C  +G  + G LV  +   SE+R   + R DAA      AQ+  +  +Q T GAD
Sbjct: 612 LCMAAGVALPGGLVVLLWHLSEKRKAEDDRWDAAAAAVPRAQDGEEEAEQTTNGAD 667


>02_05_0876 - 32399066-32399920
          Length = 284

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 475 RSSEERHNQ-RSDAAELENHPAQNPSKRTDQQTAGADRDCTQDRGQR*KLRFSD 633
           RSS++R ++ +  A +   HPA NPS         + R   ++R +R +  F+D
Sbjct: 14  RSSKKRSSRPKPRAGDAARHPAPNPSPPPAAAAPASSRSRERERKRRQRGAFAD 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,299,440
Number of Sequences: 37544
Number of extensions: 272494
Number of successful extensions: 678
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)