Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0445
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6860| Best HMM Match : zf-C3HC4 (HMM E-Value=0.14)                  29   2.4  
SB_21417| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)                    28   5.5  
SB_2635| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.3  
SB_47002| Best HMM Match : RVT_1 (HMM E-Value=1.5e-16)                 27   9.7  
SB_27426| Best HMM Match : RseA_C (HMM E-Value=6.5)                    27   9.7  
SB_10431| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_30776| Best HMM Match : HLH (HMM E-Value=1.7e-13)                   27   9.7  

>SB_6860| Best HMM Match : zf-C3HC4 (HMM E-Value=0.14)
          Length = 129

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 455 GLLPECPGVQKNATISARMLPNLKITLHKILPNGLISRQLVP 580
           GLLP CP  +K      R  P +K+     L  G + + +VP
Sbjct: 40  GLLPTCPHCRKGREQQTRAYPTIKLIDTVDLEGGPVGKPVVP 81


>SB_21417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +1

Query: 433 SGYRISGRLVT*MSRSSEERHNQRSDAAELENHPAQNPSKRTDQQTAGADRDC 591
           SG+ I   L+  + R+ E+  NQ  DAA L NH  QN  +    +     R+C
Sbjct: 424 SGFNIITILIHELYRNLEDGWNQVPDAAYLVNHLVQNFKQGLQIRHRTPGREC 476


>SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)
          Length = 1348

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +2

Query: 377  TVLVLASINIATGISYVPKADIGYPAGLLPECPGVQKNATISARMLPNLKITLH 538
            T L+LA +   TG+  V K  +    G+L  C   +KN   S R LP L  + H
Sbjct: 854  TGLLLAEVKRMTGLDQVIKV-LTRDTGILDWCLTNRKNLYCSPRQLPKLGTSDH 906


>SB_2635| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +2

Query: 443  GYPAGLLPECPGVQKNATISARMLPNLKITLHKILPNGLISRQLVPIGTAPKIV--AKDK 616
            GYP  +   C   ++N ++      NL+   H+I     +S + + I    K++  +KD+
Sbjct: 914  GYPINVNVNCDVTKQNLSLQCHSNENLRSVRHRIAAKLNVSAEQIQIFNNEKLLMSSKDQ 973

Query: 617  SYDFQIE 637
               +Q++
Sbjct: 974  KLLYQLD 980


>SB_47002| Best HMM Match : RVT_1 (HMM E-Value=1.5e-16)
          Length = 894

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 497 ISARMLPNLKITLHKILPNGLISRQLVPIGTAPKIVAKDKSYD 625
           ++  +LP LK  L ++   G+ISR  VP      +V   KS D
Sbjct: 96  VALPLLPKLKQELERLEAQGVISRVEVPTDWCAPMVVVPKSND 138


>SB_27426| Best HMM Match : RseA_C (HMM E-Value=6.5)
          Length = 154

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 478 SSEERHNQRSDAAELENHPAQNPSKRTDQQTAGADRD 588
           + +ER  + S    L NHP Q P + +  QT     D
Sbjct: 83  NQKERERRSSRRRTLRNHPTQAPDETSSDQTFTEQED 119


>SB_10431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 478 SSEERHNQRSDAAELENHPAQNPSKRTDQQTAGADRD 588
           + +ER  + S    L NHP Q P + +  QT     D
Sbjct: 188 NQKERERRSSRRRTLRNHPTQAPDETSSDQTFTEQED 224


>SB_30776| Best HMM Match : HLH (HMM E-Value=1.7e-13)
          Length = 1217

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 401 NIATGISYVPKADIGYPAGLLPECPGVQKNATISARM-LPNLKITLHKILPNGLIS 565
           ++ T  S +   ++G    L+P    V  N+ +   + LP ++ T+  +LP GLI+
Sbjct: 313 SLHTVSSIMQSPNLGMQVSLVPNT-SVSNNSVVPVNLTLPAIQTTVSPVLPQGLIN 367


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,118,632
Number of Sequences: 59808
Number of extensions: 327110
Number of successful extensions: 756
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)