Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0445
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038619-6|AAB92077.2|  442|Caenorhabditis elegans Hypothetical ...    31   0.91 
Z81474-5|CAB03906.1|  361|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U41025-1|AAM51508.1|  407|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AF000266-4|ABB51177.1|  403|Caenorhabditis elegans Hypothetical ...    28   6.4  
AC024810-7|AAF60765.1|  297|Caenorhabditis elegans Hypothetical ...    28   6.4  
Z83230-3|CAB05743.1|  254|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z83230-2|CAC42304.1|  444|Caenorhabditis elegans Hypothetical pr...    27   8.5  
U13642-4|AAG00043.2|  687|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>AF038619-6|AAB92077.2|  442|Caenorhabditis elegans Hypothetical
           protein F56A11.6 protein.
          Length = 442

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 472 SRSSEERHNQRSDAAELENHPAQNPSKRTDQQTAGADRDCTQDRGQR 612
           SRS ++R   RS   E    P ++  K  D+    +D+D ++ R  R
Sbjct: 269 SRSRQDRERDRSRGGEKSRSPRKSHQKSVDRDKTRSDKDRSRSRKDR 315


>Z81474-5|CAB03906.1|  361|Caenorhabditis elegans Hypothetical
           protein C18D4.9 protein.
          Length = 361

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +1

Query: 10  TGRVCECVARVPHAYRLRIKKKTILV 87
           TGRV   V+ V   +RLRI KKT L+
Sbjct: 185 TGRVFYLVSTVERVFRLRISKKTALL 210


>U41025-1|AAM51508.1|  407|Caenorhabditis elegans Hypothetical
           protein C01C4.3b protein.
          Length = 407

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 475 RSSEERHNQRSDAAELENHPAQNPSKRTDQQ 567
           R SE  H+ R    +L+NHP +N ++   +Q
Sbjct: 20  RKSENAHSHRVVLNQLQNHPPRNATQSPQRQ 50


>AF000266-4|ABB51177.1|  403|Caenorhabditis elegans Hypothetical
           protein W08F4.8b protein.
          Length = 403

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 625 IVTFIFGHDLGCSPDRH-QLSADQSVWKDFVQGDFQVRQHPSAD 497
           +++ +F  D  C  ++  ++  D S WKD    D +   HP+ D
Sbjct: 15  VISRVFKRDSECEEEKFSKMPIDYSKWKDIEVSDDEDDTHPNID 58


>AC024810-7|AAF60765.1|  297|Caenorhabditis elegans Hypothetical
           protein Y54E10A.10 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +1

Query: 55  RLRIKK-KTILVKRANSLIRNNKKKTVCR 138
           +++ KK K +LV RA+  + N+KK   CR
Sbjct: 6   KIKTKKGKRVLVNRASKTVENDKKALFCR 34


>Z83230-3|CAB05743.1|  254|Caenorhabditis elegans Hypothetical
           protein F56A8.3b protein.
          Length = 254

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 478 SSEERHNQRSDAAELENHPAQNPSKRTDQ 564
           S +  H+Q+  + + E HP +N  K+T+Q
Sbjct: 17  SHKNNHSQQPKSQKKEPHPKKNEQKKTEQ 45


>Z83230-2|CAC42304.1|  444|Caenorhabditis elegans Hypothetical
           protein F56A8.3a protein.
          Length = 444

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 478 SSEERHNQRSDAAELENHPAQNPSKRTDQ 564
           S +  H+Q+  + + E HP +N  K+T+Q
Sbjct: 207 SHKNNHSQQPKSQKKEPHPKKNEQKKTEQ 235


>U13642-4|AAG00043.2|  687|Caenorhabditis elegans Hypothetical
           protein ZC395.8 protein.
          Length = 687

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 24/96 (25%), Positives = 39/96 (40%)
 Frame = +1

Query: 325 DLRWIRQENVEDHVNPEDSAGASFHQHSDGNFICS*SGYRISGRLVT*MSRSSEERHNQR 504
           D RW R     D+ NP + +  SFHQ +         G+  S R  +     S   +N  
Sbjct: 604 DERWSRN----DYSNPRNYSNRSFHQRNQ-------RGHSSSNRFNS--PFVSRNNYNNN 650

Query: 505 SDAAELENHPAQNPSKRTDQQTAGADRDCTQDRGQR 612
           S+  E  +  ++  S  ++  +  + R    DRG R
Sbjct: 651 SETTEGSSRRSEYNSSSSNHHSRSSYRGNRDDRGSR 686


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,442,023
Number of Sequences: 27780
Number of extensions: 250296
Number of successful extensions: 639
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)