Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0445
         (637 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40390.1 68418.m04899 raffinose synthase family protein simil...    33   0.16 
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam...    31   0.48 
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam...    31   0.48 
At5g51330.1 68418.m06364 meiosis protein-related (DYAD) (SWI1) a...    29   2.6  
At3g62270.1 68416.m06996 anion exchange family protein contains ...    29   3.4  
At3g03470.1 68416.m00345 cytochrome P450, putative similar to cy...    27   7.9  
At2g47160.1 68415.m05889 anion exchange family protein contains ...    27   7.9  

>At5g40390.1 68418.m04899 raffinose synthase family protein similar
           to galactinol-raffinose galactosyltransferase [Vigna
           angularis] GI:6634701, seed imbibition protein
           GB:AAA32975 GI:167100 from [Hordeum vulgare]; contains
           Pfam profile PF05691: Raffinose synthase or seed
           imbibition protein Sip1
          Length = 783

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = +2

Query: 422 YVPKADIGYPAGLLPECPGVQKNATISARMLPNLKITLHKILPNGLISRQLVPIGTAPKI 601
           YV  A  GY  GL PE P +  +  I   + P LK+T+  +  + +I      IG A   
Sbjct: 333 YVWHALCGYWGGLRPEAPALPPSTIIRPELSPGLKLTMEDLAVDKIIE---TGIGFASPD 389

Query: 602 VAKD 613
           +AK+
Sbjct: 390 LAKE 393


>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
           profile: PF00628 PHD-finger
          Length = 482

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = +2

Query: 392 ASINIATGISYVPKADIGYPAGLLPECPGVQKNATISARMLPNLK--ITLHKILPNGLIS 565
           AS+N  T  S     +IG          G    A +S    PN     +   ++ NGLIS
Sbjct: 174 ASVNAKTTASAAKTTNIGSQGSKENVACGANSPAPVSLTETPNRTGIASTISVINNGLIS 233

Query: 566 RQLVPIGT 589
           + L P+GT
Sbjct: 234 KPLTPVGT 241


>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
           profile: PF00628 PHD-finger
          Length = 743

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = +2

Query: 392 ASINIATGISYVPKADIGYPAGLLPECPGVQKNATISARMLPNLK--ITLHKILPNGLIS 565
           AS+N  T  S     +IG          G    A +S    PN     +   ++ NGLIS
Sbjct: 435 ASVNAKTTASAAKTTNIGSQGSKENVACGANSPAPVSLTETPNRTGIASTISVINNGLIS 494

Query: 566 RQLVPIGT 589
           + L P+GT
Sbjct: 495 KPLTPVGT 502


>At5g51330.1 68418.m06364 meiosis protein-related (DYAD) (SWI1)
           annotation temporarily based on supporting cDNA
           gi|18483289|gb|AF466153.1|; supporting cDNA are SWITCH1
           splice variant S and SWITCH1 splice variant L (SWI1)
           GI:16033413 and GI:16033410
          Length = 639

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
 Frame = -2

Query: 441 ISALGTYEIPVAMLMEASTSTVLRVDVIL-------DIFLSYPPQVSLDNHFSYTK 295
           I A   YEI  ++L + S   +  + V++       D+ L YP   SL +HF Y++
Sbjct: 35  IRAGSYYEIDASILPQRSPENLKSIRVVMVSKITASDVSLRYPSMFSLRSHFDYSR 90


>At3g62270.1 68416.m06996 anion exchange family protein contains
           similarity to anion exchanger 3, cardiac splice form -
           Rattus norvegicus, PIR:A42497
          Length = 703

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
 Frame = +2

Query: 410 TGISYVPKADI--GYPAGLL---PECPGVQKNATISARML 514
           TG+SY+P  D+  G P  L    P  PG  +N T+   ML
Sbjct: 248 TGVSYIPTGDVPKGIPRRLFSPNPWSPGAYENWTVVKEML 287


>At3g03470.1 68416.m00345 cytochrome P450, putative similar to
           cytochrome P450 89A2 GB:Q42602 [Arabidopsis thaliana]
          Length = 511

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -3

Query: 143 ISLQTVFFLLFRINEFALFTKIVFFFIRNRYACG 42
           + + T+ FL+     F++F K++FFF  ++   G
Sbjct: 1   MEITTIIFLIISSLTFSIFLKLIFFFSTHKLPPG 34


>At2g47160.1 68415.m05889 anion exchange family protein contains
           some similarity to SWISS-PROT:P04919 anion transport
           protein (anion exchange protein 1) [Mouse] {Mus
           musculus}
          Length = 704

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
 Frame = +2

Query: 410 TGISYVPKADI--GYPAGLL---PECPGVQKNATISARML 514
           TG+SY+P  D+  G P  L    P  PG   N T+   ML
Sbjct: 248 TGVSYIPAGDVPKGIPRRLFSPNPWSPGAYGNWTVVKEML 287


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,546,752
Number of Sequences: 28952
Number of extensions: 228566
Number of successful extensions: 580
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)