Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0444
         (362 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    26   2.1  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    26   2.1  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    24   6.3  

>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = +3

Query: 204 EKKILYRLSTPVLSRTWVIGTGVRTGGYPEKGRAKTFG 317
           +KK  YRL   +L  TW  GT  RTG    KG  + FG
Sbjct: 291 KKKYKYRL---ILDETWSFGTCGRTG----KGLTEHFG 321


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 125 NMYTGFCFLLISICALSFAKELDKKQREK 211
           N +T +     SIC  SFA++ DK++ E+
Sbjct: 592 NTHTNYRPFQCSICKKSFARQHDKRRHEQ 620


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +2

Query: 50  PRAAGIRHEAKSNASQVRCAKNLFDNMYTGFC---FLLISICALS 175
           P    +R + K +A +++   N+F  +YT +C     + S+C LS
Sbjct: 583 PELYDLRKKLKQSAPKLQ---NIFTTLYTAWCHNSIAVFSLCLLS 624


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,389,819
Number of Sequences: 5004
Number of extensions: 26124
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)