Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0444
(362 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0317 - 22265786-22267618,22267874-22268446,22268546-222686... 28 2.6
07_01_0882 + 7342606-7342842,7343601-7344245,7344515-7344907 27 3.4
09_02_0351 - 7686974-7686983,7687142-7687195,7687363-7687408,768... 27 4.5
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 27 6.0
11_01_0388 + 2933006-2934173,2934312-2934371,2934877-2935067 27 6.0
06_03_1231 + 28580006-28580934,28581810-28582086 27 6.0
03_02_0488 - 8824980-8825267,8825364-8827775 27 6.0
12_01_0508 + 4027113-4028522 26 7.9
12_01_0050 - 421227-421243,421508-421569,421574-421725,422310-42... 26 7.9
11_01_0048 - 361999-362220,362321-362412,362499-362561,362606-36... 26 7.9
07_03_0689 + 20711313-20711906,20713224-20713860,20713946-20714049 26 7.9
03_04_0053 + 16873735-16873927,16874011-16874162,16874286-168743... 26 7.9
01_06_1560 + 38251268-38251471,38251567-38251672,38251992-382522... 26 7.9
01_03_0239 + 14084920-14085141,14085394-14085641,14086137-140864... 26 7.9
>09_06_0317 - 22265786-22267618,22267874-22268446,22268546-22268677,
22268931-22269137,22269287-22269388,22270742-22271032
Length = 1045
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 5 TGXSP-RWRPLXN*WIPRAAGIRHEAKSNASQV 100
TG +P +W P N W+ R+ +++ A +AS V
Sbjct: 926 TGIAPEKWYPSKNNWVDRSHEVQNSALESASSV 958
>07_01_0882 + 7342606-7342842,7343601-7344245,7344515-7344907
Length = 424
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 343 PWEKWGVKGPKVFARPFSGYPPVR 272
PW +WG G +F F+GY +R
Sbjct: 396 PWRRWGDYGFLLFGLGFAGYGLIR 419
>09_02_0351 -
7686974-7686983,7687142-7687195,7687363-7687408,
7688179-7688280,7688683-7689284,7689599-7689783
Length = 332
Score = 27.1 bits (57), Expect = 4.5
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 243 SRTWVIGTGVRTGGYPEKGRAKTFGPLTPHFSQGPLTIFL 362
SRT TG R PE G +K+ G +GPL + L
Sbjct: 133 SRTHQPQTGERRRSTPETGSSKSAGKRPARREEGPLQVVL 172
>12_02_0118 -
13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = -3
Query: 303 PDPFQGTPLSGLPYRLPTSWKG---PGYLS 223
P PF G P + P+R P W+G PG +S
Sbjct: 262 PPPFMGVPGNAPPFR-PPGWQGQARPGAMS 290
>11_01_0388 + 2933006-2934173,2934312-2934371,2934877-2935067
Length = 472
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 282 GYPEKGRAKTFGPLTPHFSQG 344
G PE G A +F L HF QG
Sbjct: 79 GIPENGAASSFDRLAYHFDQG 99
>06_03_1231 + 28580006-28580934,28581810-28582086
Length = 401
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 113 NLFDNMYTGFCFL-LISICALSFAKELDKKQREKDFVPLKYPG 238
+L+ ++ FCF ++ C L A + Q + +F+P PG
Sbjct: 312 HLYSDVGENFCFWKMLEKCCLDVADFIGHSQNKIEFIPSGLPG 354
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 306 LPDPFQGTPLSGLPYRLPTSWKGPG 232
LP+ F GT SG P L WK G
Sbjct: 734 LPNGFHGTSTSGQPLPLIERWKSGG 758
>12_01_0508 + 4027113-4028522
Length = 469
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 317 AKSFCPTLFRVPPCPDSR 264
A + CPTL R+P PD+R
Sbjct: 161 ADALCPTLTRLPRFPDNR 178
>12_01_0050 -
421227-421243,421508-421569,421574-421725,422310-423115,
424059-424359
Length = 445
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 81 NQTPLKYVVLKTCSTICTPDFVFCLYPS 164
N+TPLK ++L +T C P++ C+ S
Sbjct: 99 NETPLKPMMLSDPTTDCRPNWSGCIVHS 126
>11_01_0048 -
361999-362220,362321-362412,362499-362561,362606-362717,
363285-364090,368545-368806
Length = 518
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 81 NQTPLKYVVLKTCSTICTPDFVFCLYPS 164
N+TPLK ++L +T C P++ C+ S
Sbjct: 86 NETPLKPMMLSDPTTDCRPNWSGCIVHS 113
>07_03_0689 +
20711313-20711906,20713224-20713860,20713946-20714049
Length = 444
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -2
Query: 79 RLVPNSCSPGDPLVXERPPP 20
RL P SC+PG P P P
Sbjct: 38 RLTPPSCTPGTPAALPSPGP 57
>03_04_0053 +
16873735-16873927,16874011-16874162,16874286-16874380,
16874704-16874818,16875054-16875343,16875436-16875585,
16876478-16876598,16876671-16876942,16877466-16877937
Length = 619
Score = 26.2 bits (55), Expect = 7.9
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +2
Query: 185 ELDKKQREKDFVPLKYPGPFQDVGNRY 265
ELD+K +EK+ + ++Y ++ + N Y
Sbjct: 176 ELDRKLKEKETIVVEYTNLYEQIQNGY 202
>01_06_1560 +
38251268-38251471,38251567-38251672,38251992-38252203,
38252306-38252512,38253327-38254694
Length = 698
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 90 PLKYVVLKTCSTICTPDFVF 149
PLKY+ K IC DFVF
Sbjct: 134 PLKYIAKKGKENICRLDFVF 153
>01_03_0239 +
14084920-14085141,14085394-14085641,14086137-14086461,
14090401-14090658
Length = 350
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 225 LSTPVLSRTWVIGT-GVRTGGYPEKGRAKTFGPLTPHFSQGPLTIFL 362
+ + V++ WV G VR YP G+A ++PH +TI L
Sbjct: 184 VESEVIAERWVGGVQSVRVQYYPPCGQADKVVGISPHSDADLVTILL 230
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,827,175
Number of Sequences: 37544
Number of extensions: 198021
Number of successful extensions: 528
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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