Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0444
(362 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC107163-1|AAI07164.1| 551|Homo sapiens hypothetical protein FL... 30 2.5
BC107162-1|AAI07163.1| 551|Homo sapiens hypothetical protein FL... 30 2.5
AK023367-1|BAB14544.1| 436|Homo sapiens protein ( Homo sapiens ... 30 2.5
BC117170-1|AAI17171.1| 1714|Homo sapiens collagen, type XXIV, al... 28 7.8
BC113654-1|AAI13655.1| 1714|Homo sapiens collagen, type XXIV, al... 28 7.8
AY244357-1|AAP80185.1| 1714|Homo sapiens alpha 1 type XXIV colla... 28 7.8
AL445427-1|CAI19120.1| 1714|Homo sapiens collagen, type XXIV, al... 28 7.8
AL359971-1|CAI16233.1| 1714|Homo sapiens collagen, type XXIV, al... 28 7.8
AL356059-1|CAH71121.1| 1714|Homo sapiens collagen, type XXIV, al... 28 7.8
>BC107163-1|AAI07164.1| 551|Homo sapiens hypothetical protein
FLJ13305 protein.
Length = 551
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +2
Query: 107 AKNLFDNMYTGFCFLLISICA-LSFAKELDKKQREKDFVP-LKYPGPFQ 247
AK L +NM+T FC C F ++++ K++VP + P PFQ
Sbjct: 86 AKELINNMWTDFCVEDYIRCKDTGFHAAEKRRKKRKEWVPTITVPEPFQ 134
>BC107162-1|AAI07163.1| 551|Homo sapiens hypothetical protein
FLJ13305 protein.
Length = 551
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +2
Query: 107 AKNLFDNMYTGFCFLLISICA-LSFAKELDKKQREKDFVP-LKYPGPFQ 247
AK L +NM+T FC C F ++++ K++VP + P PFQ
Sbjct: 86 AKELINNMWTDFCVEDYIRCKDTGFHAAEKRRKKRKEWVPTITVPEPFQ 134
>AK023367-1|BAB14544.1| 436|Homo sapiens protein ( Homo sapiens
cDNA FLJ13305 fis, clone OVARC1001399. ).
Length = 436
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +2
Query: 107 AKNLFDNMYTGFCFLLISICA-LSFAKELDKKQREKDFVP-LKYPGPFQ 247
AK L +NM+T FC C F ++++ K++VP + P PFQ
Sbjct: 86 AKELINNMWTDFCVEDYIRCKDTGFHAAEKRRKKRKEWVPTITVPEPFQ 134
>BC117170-1|AAI17171.1| 1714|Homo sapiens collagen, type XXIV, alpha 1
protein.
Length = 1714
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +3
Query: 219 YRLSTPVLSRTWVIGTGVRTGGYPEKGRAKTFGPLTPHFSQGP 347
+R +T L R +IG RTG EKG GP P GP
Sbjct: 1427 HRGNTGPLGREGIIGPTGRTGPRGEKGFRGETGPQGPRGQPGP 1469
>BC113654-1|AAI13655.1| 1714|Homo sapiens collagen, type XXIV, alpha 1
protein.
Length = 1714
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +3
Query: 219 YRLSTPVLSRTWVIGTGVRTGGYPEKGRAKTFGPLTPHFSQGP 347
+R +T L R +IG RTG EKG GP P GP
Sbjct: 1427 HRGNTGPLGREGIIGPTGRTGPRGEKGFRGETGPQGPRGQPGP 1469
>AY244357-1|AAP80185.1| 1714|Homo sapiens alpha 1 type XXIV collagen
precursor protein.
Length = 1714
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +3
Query: 219 YRLSTPVLSRTWVIGTGVRTGGYPEKGRAKTFGPLTPHFSQGP 347
+R +T L R +IG RTG EKG GP P GP
Sbjct: 1427 HRGNTGPLGREGIIGPTGRTGPRGEKGFRGETGPQGPRGQPGP 1469
>AL445427-1|CAI19120.1| 1714|Homo sapiens collagen, type XXIV, alpha 1
protein.
Length = 1714
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +3
Query: 219 YRLSTPVLSRTWVIGTGVRTGGYPEKGRAKTFGPLTPHFSQGP 347
+R +T L R +IG RTG EKG GP P GP
Sbjct: 1427 HRGNTGPLGREGIIGPTGRTGPRGEKGFRGETGPQGPRGQPGP 1469
>AL359971-1|CAI16233.1| 1714|Homo sapiens collagen, type XXIV, alpha 1
protein.
Length = 1714
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +3
Query: 219 YRLSTPVLSRTWVIGTGVRTGGYPEKGRAKTFGPLTPHFSQGP 347
+R +T L R +IG RTG EKG GP P GP
Sbjct: 1427 HRGNTGPLGREGIIGPTGRTGPRGEKGFRGETGPQGPRGQPGP 1469
>AL356059-1|CAH71121.1| 1714|Homo sapiens collagen, type XXIV, alpha 1
protein.
Length = 1714
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +3
Query: 219 YRLSTPVLSRTWVIGTGVRTGGYPEKGRAKTFGPLTPHFSQGP 347
+R +T L R +IG RTG EKG GP P GP
Sbjct: 1427 HRGNTGPLGREGIIGPTGRTGPRGEKGFRGETGPQGPRGQPGP 1469
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,895,664
Number of Sequences: 237096
Number of extensions: 1101865
Number of successful extensions: 2340
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2340
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2248517154
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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