Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0444
         (362 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    24   0.64 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   2.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   4.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   5.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    20   7.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    20   7.8  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    20   7.8  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    20   7.8  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    20   7.8  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    20   7.8  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    20   7.8  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.8 bits (49), Expect = 0.64
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 262 VRESGQGGTLKRVGQKLLAL*PPI 333
           V  +G GGT+  +G+KL  L P I
Sbjct: 211 VAGAGTGGTISGIGRKLKELSPNI 234


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = +3

Query: 216 LYRLSTPVLSRTWVIGTGV 272
           +YR+      R W++ TG+
Sbjct: 123 VYRMQVDKCGRLWILDTGI 141


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 70  PNSCSPGDPLVXERPPPR 17
           P    PGD  + +RP PR
Sbjct: 916 PGRAWPGDSDIRQRPIPR 933


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +2

Query: 191 DKKQREKDFVPLKYP 235
           D + R+K+F+P ++P
Sbjct: 644 DLEPRQKEFLPKEFP 658


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 93  LKYVVLKTCSTICTPDFVF 149
           LKY+ L   S +  PD  F
Sbjct: 104 LKYLTLTDASRVWMPDLFF 122


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 93  LKYVVLKTCSTICTPDFVF 149
           LKY+ L   S +  PD  F
Sbjct: 104 LKYLTLTDASRVWMPDLFF 122


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 195 RSKEKKILYRLSTPVLS 245
           RSKE+KI+  LS   +S
Sbjct: 75  RSKERKIISSLSNNYIS 91


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 195 RSKEKKILYRLSTPVLS 245
           RSKE+KI+  LS   +S
Sbjct: 75  RSKERKIISSLSNNYIS 91


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 219 YRLSTPVLSRTWVIGTG 269
           YR+      R WV+ TG
Sbjct: 131 YRIHADSCDRLWVLDTG 147


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 195 RSKEKKILYRLSTPVLS 245
           RSKE+KI+  LS   +S
Sbjct: 313 RSKERKIISSLSNNYIS 329


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 185 ELDKKQREKDFVPLKYPGPFQDV 253
           ELDK  +EK    L+   P +++
Sbjct: 499 ELDKMDKEKKLEDLEMGTPLENI 521


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,511
Number of Sequences: 438
Number of extensions: 1895
Number of successful extensions: 18
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)