Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0444
         (362 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12440.1 68416.m01549 extensin family protein contains simila...    27   4.9  
At5g17270.1 68418.m02023 tetratricopeptide repeat (TPR)-containi...    26   8.6  

>At3g12440.1 68416.m01549 extensin family protein contains
           similarity to Swiss-Prot:Q38913 extensin 1 precursor
           (AtExt1) (AtExt4) [Arabidopsis thaliana]
          Length = 353

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 243 SRTWVIGTGVRTGGYPEKGRAKTFGPLTPHFSQGPLT 353
           SR  V+G GV+   +P    A+   P++ H    P+T
Sbjct: 49  SRPLVVGVGVQWTPHPTSPPARYHSPVSYHSDSSPVT 85


>At5g17270.1 68418.m02023 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 899

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 346 GPWEKWGVKGPKVFARP 296
           GP+E WG + P+V+  P
Sbjct: 352 GPYEAWGGEAPEVYMTP 368


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,554,201
Number of Sequences: 28952
Number of extensions: 150314
Number of successful extensions: 369
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)