Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0443
         (759 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_45862| Best HMM Match : GMP_synt_C (HMM E-Value=0)                  28   7.2  

>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2978

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
 Frame = +3

Query: 510  TVSSNFNHIFLYL*SGHWF--------FFLIEIL*SSRPPKFDTFTEAY*DISNTRTYFE 665
            T++  F  +  +L +G+WF        F  + ++ +   P FD    +   +     Y  
Sbjct: 2021 TITKTFKQLLKHLFTGNWFSCIQPLSSFTNLSVILAGSSPLFDAIELSSKPVKRAYQYLN 2080

Query: 666  RRDKNLN 686
             RDKN+N
Sbjct: 2081 GRDKNMN 2087


>SB_45862| Best HMM Match : GMP_synt_C (HMM E-Value=0)
          Length = 687

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 662 KVCSSIRDILISFGKRIKFR 603
           KVC +I  +  +FGKRIKF+
Sbjct: 182 KVCHNINRVCYAFGKRIKFQ 201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,810,102
Number of Sequences: 59808
Number of extensions: 420362
Number of successful extensions: 764
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)