Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0443
         (759 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50810.1 68416.m05564 integral membrane protein, putative con...    30   1.5  
At3g52115.1 68416.m05720 hypothetical protein                          29   2.5  
At4g16880.1 68417.m02548 disease resistance protein-related cont...    29   3.4  

>At3g50810.1 68416.m05564 integral membrane protein, putative
           contains 4 transmembrane domains; contains Pfam PF04535
           : Domain of unknown function (DUF588);  similar to
           putative ethylene responsive element binding protein
           (GI:22135858) [Arabidopsis thaliana]
          Length = 235

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -2

Query: 515 YCYSVPIVYSCN-WSVLQARIPRQMLLLKLSPTFIDPVSL*FLGDFAVISF 366
           +CY   ++     WS+L A      +L+KL P  +  +S+ F GDF V+SF
Sbjct: 43  FCYLAMVMAIVTPWSILLALTDTYSVLVKLLPQELRVLSIVFAGDF-VLSF 92


>At3g52115.1 68416.m05720 hypothetical protein
          Length = 588

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = +1

Query: 181 ETSLKMFKNIDRLRKRIEKDNL 246
           ETS K FK+++ +RK+ E++NL
Sbjct: 507 ETSKKSFKHVESVRKKAERENL 528


>At4g16880.1 68417.m02548 disease resistance protein-related
           contains weak similarity to disease resistance protein
           RPP4 [Arabidopsis thaliana] gi|20270890|gb|AAM18462
          Length = 230

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 589 KALDLRNLIRLPKLIKISRILEHTLRDEIKI 681
           ++L+  NL+R PKL     I+ H+ R EI I
Sbjct: 140 ESLEYLNLLRCPKLRNFPEIIMHSFRGEIDI 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,537,839
Number of Sequences: 28952
Number of extensions: 310860
Number of successful extensions: 592
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)