Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0442
         (626 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32330.1 68415.m03952 expressed protein   contains Pfam profi...    28   4.4  
At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ...    27   7.7  

>At2g32330.1 68415.m03952 expressed protein   contains Pfam profile:
           PF04446 family of unknown function (DUF549)
          Length = 320

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 253 PVDRISRSSKLLQIVKRWAGRHRTWTDHKSCHRDIHHSKK 372
           PV R+ R   L+   +  AGR   W +H S H+D+ H  K
Sbjct: 23  PVKRLRRRETLVHS-ENVAGRS-FWNEHSSLHKDLGHFAK 60


>At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to
           DNA polymerase III holoenzyme tau subunit [Thermus
           thermophilus] GI:2583049
          Length = 1218

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 281 NCYKS*RGGPVVTARGPIINHATETSIILRR*INDASMETVN 406
           NCYKS     ++ + G I +H  E SI     +N  S E +N
Sbjct: 874 NCYKSSSSSQMIESEGSIASH--ENSIASTMMLNQRSSEKLN 913


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,303,197
Number of Sequences: 28952
Number of extensions: 294584
Number of successful extensions: 644
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)