Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0440
(729 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080... 111 5e-25
05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891... 101 6e-22
01_01_0858 - 6699126-6699128,6699219-6699318,6700052-6700278,670... 98 5e-21
09_02_0115 + 4413714-4414475 29 2.9
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122... 29 3.8
12_02_0312 + 17395716-17398112 29 5.0
05_06_0238 - 26621843-26622457,26622625-26623375,26624372-266244... 29 5.0
02_05_0534 + 29819323-29819900,29820122-29820202,29821007-298210... 29 5.0
01_01_0784 + 6068230-6068580,6068676-6069127,6070208-6070736 28 6.6
06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229 28 8.7
03_02_0011 - 4909292-4909434,4909520-4909626,4910100-4910171,491... 28 8.7
>01_06_0134 +
26805329-26805430,26807130-26807230,26807876-26808032,
26808386-26808582,26809188-26809287,26809501-26809536
Length = 230
Score = 111 bits (267), Expect = 5e-25
Identities = 73/218 (33%), Positives = 114/218 (52%), Gaps = 11/218 (5%)
Frame = +2
Query: 107 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 286
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ KI
Sbjct: 1 MNDADVAKQIQQMVRFIRQEAEEKASEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
Query: 287 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 466
I+ S LN +R+KVL+ ++D V ++ ++A K+L V + Y LL L+VQ
Sbjct: 61 QVEVRKKIEYSMQLNASRIKVLQAQDDLVNSMKEDATKQLLRVSHNHHEYKNLLKELVVQ 120
Query: 467 ALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIK-KDVVLKVDTENFLSPDT---- 631
L +L EP V +R R+ D VES+L A+ +Y +K + + VD + +L P
Sbjct: 121 GLLRLKEPAVLLRCRKEDHHHVESVLHSAKNEYASKAEVHHPEILVDHDVYLPPSPSSHD 180
Query: 632 -----C-GGIELVAARGRIKISNTLESRLELIAQQLLP 727
C GG+ L + G+I NTL++RLE++ ++ LP
Sbjct: 181 SHERFCSGGVVLASRDGKIVCENTLDARLEVVFRKKLP 218
>05_05_0231 +
23488588-23488689,23488775-23488875,23489012-23489168,
23489365-23489594,23489696-23489795,23489878-23489916
Length = 242
Score = 101 bits (242), Expect = 6e-22
Identities = 73/229 (31%), Positives = 116/229 (50%), Gaps = 22/229 (9%)
Frame = +2
Query: 107 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 286
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ +I
Sbjct: 1 MNDADVGKQIQQMVRFILQEAEEKASEISVAAEEEFNIEKLQLVESEKRRIRQDYERKAK 60
Query: 287 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIV- 463
I+ S LN AR+KVL+ ++ V + ++A K L V KD Y ++L LIV
Sbjct: 61 QVDVGRKIEYSTQLNAARIKVLRAQDGVVGEMKEDAGKSLLRVTKDATAYRKVLKGLIVQ 120
Query: 464 ----------QALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIKKDV-VLKVDTE 610
Q+L +L EP+V +R R+ D+ VES+L A+ +Y K K ++ + +D +
Sbjct: 121 RKDSEIIDQIQSLLRLREPSVVLRCREADRGHVESVLEAAKKEYAEKAKVNLPKILIDGK 180
Query: 611 NFLSPDT---------C-GGIELVAARGRIKISNTLESRLELIAQQLLP 727
+L P C GG+ + + G+I NTL++R+E+ +Q LP
Sbjct: 181 VYLPPPKTARDAHGPFCSGGVVIASQDGKIVCDNTLDARVEISFKQKLP 229
>01_01_0858 -
6699126-6699128,6699219-6699318,6700052-6700278,
6701032-6701188,6701422-6701522,6702147-6702251
Length = 230
Score = 98.3 bits (234), Expect = 5e-21
Identities = 68/228 (29%), Positives = 113/228 (49%), Gaps = 21/228 (9%)
Frame = +2
Query: 107 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 286
++D DV +Q+K M FI Q F IEK +LV+ ++ +I
Sbjct: 2 MNDGDVARQLKQMTDFIRQEAVEKAAEIEAAAAEEFQIEKLQLVEAEKKRIRLEFERNEK 61
Query: 287 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 466
I+ S LN +RL+VL+ ++D ++L+ A K L + +D +Y LL IVQ
Sbjct: 62 QGDIKKKIEYSKQLNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIVQ 121
Query: 467 ----------ALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNK---------IKKDV 589
+L +L EP V +R R+ D+ LVES+L A+ +Y +K + ++V
Sbjct: 122 DKLTKKNPEQSLLRLKEPAVILRCRKEDRELVESVLESAKNEYADKANIYPPEIMVDRNV 181
Query: 590 VLKVDTENFLS--PDTCGGIELVAARGRIKISNTLESRLELIAQQLLP 727
L ++ + P GG+ L + G+I NTL++RLE++ ++ LP
Sbjct: 182 YLPPAPSHYEAHGPSCSGGVVLASRDGKIVCENTLDARLEVVFRKKLP 229
>09_02_0115 + 4413714-4414475
Length = 253
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 436 LRAAGHTYCAGSLPAHGTHCHYPRPSNRQGSGG 534
LR H+ + SLP H H+PRP +GS G
Sbjct: 20 LRLFSHSSASASLPLLLGHFHHPRPVPPRGSPG 52
>10_08_0762 -
20410681-20411834,20411999-20412098,20412200-20412298,
20412563-20414133,20415080-20415128
Length = 990
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +2
Query: 335 ARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQA 469
+RL++LK R+D++ N LD+A K+ E D + E V +QA
Sbjct: 826 SRLRILKCRDDNI-NSLDDAIKQHVEACTDQPNWDEDGVVAKIQA 869
>12_02_0312 + 17395716-17398112
Length = 798
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 308 IQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLV 451
++ +N+ N L VLK+ D + + L L+ PKD +++ ELL+
Sbjct: 383 VKETNIPNTDILSVLKLSYDALPSDLRACFASLSTFPKDYEIFRELLI 430
>05_06_0238 -
26621843-26622457,26622625-26623375,26624372-26624418,
26624632-26624740,26624969-26625050,26625164-26625248,
26625320-26625439,26625735-26625800,26625994-26626041,
26626148-26626196,26626576-26626613
Length = 669
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -3
Query: 709 DQLQARLQSVADLDTSPGCNQLDSTTGVGRQKVLGVDFQHNILLDLI 569
++L+ + DL GC+ DS G+G Q L + QH + ++
Sbjct: 110 EELELTMDQFIDLCILSGCDYCDSIKGIGGQTALKLIRQHGSIESIL 156
>02_05_0534 +
29819323-29819900,29820122-29820202,29821007-29821027,
29821310-29821366,29822028-29822147,29822278-29822494
Length = 357
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 490 HCHYPRPSNRQGSGGVPARKSPNRLQE*DQEGCCVE 597
H H+ PS G GG PA SP ++ + EG VE
Sbjct: 33 HRHFSAPSQPDGGGG-PAPVSPESMKHQEIEGPTVE 67
>01_01_0784 + 6068230-6068580,6068676-6069127,6070208-6070736
Length = 443
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 457 YCAGSLPAHGTHCHYPRPSNRQGSGGVPARKSPN 558
YC P H T+ + N+ GSGGV A S N
Sbjct: 279 YCTTQPPHHMTYFKFFFQKNQWGSGGVQAPASEN 312
>06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229
Length = 212
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +1
Query: 454 TYCAGSLPAHGTHCHYPRPSNRQGSGGVPARKSP 555
T + P H CH RP R G VP SP
Sbjct: 131 TSLLAATPGHRRDCHRARPPPRPGGRLVPVAASP 164
>03_02_0011 -
4909292-4909434,4909520-4909626,4910100-4910171,
4910713-4910803,4911136-4911272,4911377-4911417,
4911681-4911746,4912756-4913082
Length = 327
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -3
Query: 532 HQSLVGLTDADSDSGFHELEESLHN 458
HQS +DADSD G LEE+L++
Sbjct: 286 HQSTEEGSDADSDDGLPPLEENLNH 310
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,335,514
Number of Sequences: 37544
Number of extensions: 412594
Number of successful extensions: 1210
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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