Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0439
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    29   0.65 
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    28   1.1  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    25   8.0  

>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = -1

Query: 454 NSLRFKILQLGFNFILMYSLTNLNMLRCLETSNLFE*R----HATIESKAKNKLSMVPCR 287
           +++  K+L   F  +   SLTNL++  CL     F+ R    HA   +  +N    V C 
Sbjct: 62  DTINRKLLDFDFEKVCSVSLTNLSVYACLVCGRYFQGRGPSSHAYFHALTENHHVFVNC- 120

Query: 286 ASSVSTLNVFIL 251
               STL  ++L
Sbjct: 121 ----STLKFYVL 128


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +3

Query: 288  RHGTIDSLFLAFDSIVA*RYSNKFDVSRHLSMFKL--VKEYIRMKLNPSCKILNRKLLQS 461
            R  ++++L     ++    Y N+ +   ++S   L  +KE +R    P CK+L R ++QS
Sbjct: 1084 RESSVNTLVSLLSNVPVTEYLNQLEDIWNMSFRTLDDIKESVREASFPLCKLLARSVIQS 1143


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = -1

Query: 139 RLQL*RHYGLLLGVVEFLEITVT 71
           RLQL +H+   LG+++F+++ +T
Sbjct: 564 RLQLQKHFRFELGLLDFIDLDLT 586


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,754,837
Number of Sequences: 5004
Number of extensions: 55203
Number of successful extensions: 138
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)