Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0439
         (709 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0017 - 6131265-6131284,6131654-6131774,6132011-6132146,613...    30   2.1  
07_01_0213 - 1573315-1573485,1573583-1573765,1573858-1574046,157...    29   2.7  
12_01_0010 + 74517-74529,76294-76394,76495-76526,76652-76662,804...    28   8.4  
11_01_0010 + 78629-78641,80422-80522,80633-80664,80790-80800,845...    28   8.4  
06_01_0320 - 2320317-2320336,2320791-2320902,2321092-2321236,232...    28   8.4  

>02_02_0017 -
           6131265-6131284,6131654-6131774,6132011-6132146,
           6132423-6132529,6133006-6133099,6133199-6133395,
           6134401-6134472,6135128-6135304,6135393-6135467,
           6135557-6135697,6136439-6136627,6136969-6137034,
           6137118-6137268,6137596-6137664,6138751-6138899,
           6138969-6139100,6139198-6139523,6139599-6139635,
           6139765-6139803,6140196-6140250,6140363-6140424,
           6140512-6140532,6140820-6140822
          Length = 812

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
 Frame = -3

Query: 227 ICFHIQ-PIQFSFNVHGYYRVFSVTT-----EINYAFAIIKALRFVTGSRRVFRNY 78
           +CFH + PI  + +  G  R++  TT      +NY    + AL ++ GSRRV   Y
Sbjct: 248 VCFHPELPITLTGSEDGTVRLWHSTTYRLENTLNYGLERVWALGYMKGSRRVVIGY 303


>07_01_0213 -
           1573315-1573485,1573583-1573765,1573858-1574046,
           1574182-1574263,1574315-1574421,1575086-1575161,
           1575457-1575637,1575711-1575828
          Length = 368

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 293 MPCELSVNIKCIHFGKSLDLFWICFHIQPIQFSFNVHGYYR 171
           + C L  N + +   K L L WI FHI  + +   V G+YR
Sbjct: 131 LTCSLGENAQPVSSAKGLYLSWISFHIS-LMWLEGVVGWYR 170


>12_01_0010 +
           74517-74529,76294-76394,76495-76526,76652-76662,
           80420-80924,80999-81181,81282-81373,81491-81764,
           81840-82053,82158-82228,82403-82509,82967-83016,
           83125-83208,84060-84119,84196-84285,84824-84900,
           85022-85106,85224-85304,85492-85595,85793-85842,
           86625-86731,87603-87725,87838-87889,88090-88202,
           88265-88405,88513-88602
          Length = 969

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 284 ELSVNIKCIHFGKSLDLFWICFHIQPIQ 201
           +  V ++ I++ KS   FW  FH+QP++
Sbjct: 521 QAEVTVQLINYTKSGKKFWNLFHLQPMR 548


>11_01_0010 +
           78629-78641,80422-80522,80633-80664,80790-80800,
           84559-85063,85136-85318,85419-85510,85628-85901,
           85977-86190,86295-86365,86540-86646,87104-87153,
           87262-87345,88197-88256,88333-88422,88961-89037,
           89160-89244,89362-89442,89630-89733,89931-89980,
           90764-90870,91743-91865,91978-92029,92230-92342,
           92404-92544,92656-92745
          Length = 969

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 284 ELSVNIKCIHFGKSLDLFWICFHIQPIQ 201
           +  V ++ I++ KS   FW  FH+QP++
Sbjct: 521 QAEVTVQLINYTKSGKKFWNLFHLQPMR 548


>06_01_0320 -
           2320317-2320336,2320791-2320902,2321092-2321236,
           2321353-2321459,2321572-2321665,2321752-2321948,
           2322311-2322382,2322504-2322618,2323060-2323176,
           2323253-2323344,2323445-2323621,2323746-2323820,
           2323911-2324051,2324671-2324859,2325298-2325363,
           2325445-2325595,2325718-2325786,2326293-2326441,
           2326526-2326657,2326756-2327081,2327167-2327203,
           2327926-2327980,2328242-2328309,2328464-2328466
          Length = 902

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
 Frame = -3

Query: 251 GKSLDLFWICFHIQ-PIQFSFNVHGYYRVFSVTT-----EINYAFAIIKALRFVTGSRRV 90
           G + ++  +CFH + PI  + +  G  R++  TT      +NY    + A+ ++ GSRR+
Sbjct: 222 GHTHNISAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAVGYMKGSRRM 281

Query: 89  FRNY 78
              Y
Sbjct: 282 VIGY 285


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,459,489
Number of Sequences: 37544
Number of extensions: 309155
Number of successful extensions: 573
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)