Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0439
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30863| Best HMM Match : Lectin_C (HMM E-Value=2.6e-05)              30   2.1  
SB_54| Best HMM Match : Actin (HMM E-Value=0)                          29   4.9  

>SB_30863| Best HMM Match : Lectin_C (HMM E-Value=2.6e-05)
          Length = 421

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 9/25 (36%), Positives = 20/25 (80%)
 Frame = -1

Query: 292 CRASSVSTLNVFILENHSTYSGYVS 218
           C+ + V ++NV ++E+H+ +SG++S
Sbjct: 271 CKETDVLSINVQVIEDHTCFSGWIS 295


>SB_54| Best HMM Match : Actin (HMM E-Value=0)
          Length = 2486

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/36 (47%), Positives = 24/36 (66%)
 Frame = +3

Query: 597 DSENTLPVAVCYTSTS*QHNPSSIIIIVAKCRQLQR 704
           D  N+L +A+C T+ S QH  S   ++V KCRQL+R
Sbjct: 261 DELNSL-LALCDTTHSTQHK-SLARLLVQKCRQLER 294


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,147,292
Number of Sequences: 59808
Number of extensions: 401144
Number of successful extensions: 742
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)