Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0439
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81478-1|CAB03932.1|  199|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z69302-10|CAA93267.1|  295|Caenorhabditis elegans Hypothetical p...    28   5.7  
Z47074-3|CAA87376.1|  295|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AF008590-1|AAB63299.1|  295|Caenorhabditis elegans paraquat resp...    28   5.7  
AC024776-20|AAK68473.2|  460|Caenorhabditis elegans Nuclear horm...    28   7.5  

>Z81478-1|CAB03932.1|  199|Caenorhabditis elegans Hypothetical
           protein C31G12.1 protein.
          Length = 199

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = -1

Query: 313 NKLSMVPCRASSVSTLNVFILENHSTYSGYVSISNPFNSHLMFTVITECFLSRPK*TMR 137
           N LS+V C   ++   N +I +NHS    + +    F +H+  T  T   +  P+ T R
Sbjct: 80  NSLSLVACGFFTIICANQYICDNHSWIVSFSTFF--FTAHVRLTNATISSIELPEKTRR 136


>Z69302-10|CAA93267.1|  295|Caenorhabditis elegans Hypothetical
           protein F40F8.7 protein.
          Length = 295

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 54  NASSSHVTVISKNSTTPSNKP*CLYNCK--RIVYFGRDRKHSV 176
           N+ S HVT+  +N     N P C +  +  R ++F ++ +H +
Sbjct: 174 NSVSYHVTIYHRNPPIKCNVPNCQFTTREARYIHFHKNYRHGI 216


>Z47074-3|CAA87376.1|  295|Caenorhabditis elegans Hypothetical
           protein F40F8.7 protein.
          Length = 295

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 54  NASSSHVTVISKNSTTPSNKP*CLYNCK--RIVYFGRDRKHSV 176
           N+ S HVT+  +N     N P C +  +  R ++F ++ +H +
Sbjct: 174 NSVSYHVTIYHRNPPIKCNVPNCQFTTREARYIHFHKNYRHGI 216


>AF008590-1|AAB63299.1|  295|Caenorhabditis elegans paraquat
           responsive protein protein.
          Length = 295

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 54  NASSSHVTVISKNSTTPSNKP*CLYNCK--RIVYFGRDRKHSV 176
           N+ S HVT+  +N     N P C +  +  R ++F ++ +H +
Sbjct: 174 NSVSYHVTIYHRNPPIKCNVPNCQFTTREARYIHFHKNYRHGI 216


>AC024776-20|AAK68473.2|  460|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 274 protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -1

Query: 85  EITVTC-DDDALTLTRYSNCICRYCYL 8
           E+T  C       +T  S CICRYC L
Sbjct: 67  EVTYKCLKGGTCVITNESRCICRYCRL 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,104,421
Number of Sequences: 27780
Number of extensions: 306736
Number of successful extensions: 716
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)