Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0439
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.53 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.53 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.7  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   8.7  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 301 MVPCRASSVSTLNVFILENHSTYSGYVSISNPFNSHLMFTVITE 170
           ++PC   S  T+  F L + S     +SIS   + H+ F ++ E
Sbjct: 252 IIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVE 295


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 301 MVPCRASSVSTLNVFILENHSTYSGYVSISNPFNSHLMFTVITE 170
           ++PC   S  T+  F L + S     +SIS   + H+ F ++ E
Sbjct: 252 IIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVE 295


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 701 LQLSAFCDYDND 666
           L+L  FCDYD D
Sbjct: 40  LKLYLFCDYDRD 51


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 301 MVPCRASSVSTLNVFILENHSTYSGYVSISNPFNSHLMFTVITE 170
           ++PC   S  T+ VF L + S     +SIS   +  + F ++ E
Sbjct: 248 IIPCMGISFLTVLVFYLPSDSGEKVSLSISILLSLTVFFLLLAE 291


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 238 TYSGYVSISNPFNSHLM 188
           T   Y++I +PF SH M
Sbjct: 149 TVERYIAICHPFISHTM 165


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,352
Number of Sequences: 438
Number of extensions: 3867
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)