Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0439
(709 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g14170.1 68416.m01791 expressed protein 31 0.99
At1g55440.1 68414.m06341 DC1 domain-containing protein contains ... 31 0.99
At1g57870.1 68414.m06566 shaggy-related protein kinase kappa, pu... 30 1.3
At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B li... 29 3.0
At3g26550.1 68416.m03314 DC1 domain-containing protein contains ... 29 4.0
At3g27490.1 68416.m03437 DC1 domain-containing protein contains ... 28 5.3
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 28 5.3
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 28 5.3
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 28 5.3
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 28 5.3
At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ... 28 7.0
At4g30850.2 68417.m04378 expressed protein contains Pfam domain,... 28 7.0
At4g30850.1 68417.m04377 expressed protein contains Pfam domain,... 28 7.0
At3g45780.1 68416.m04953 protein kinase / nonphototropic hypocot... 28 7.0
At2g02710.3 68415.m00213 PAC motif-containing protein similar to... 27 9.2
At2g02710.2 68415.m00212 PAC motif-containing protein similar to... 27 9.2
At2g02710.1 68415.m00211 PAC motif-containing protein similar to... 27 9.2
>At3g14170.1 68416.m01791 expressed protein
Length = 484
Score = 30.7 bits (66), Expect = 0.99
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = -1
Query: 406 MYSLTNLNMLRCLETSNLFE*RHATIESKAKNKLSMVPCRASSVSTLN--VFILENHSTY 233
M SLT +++ LET N S +S+VP A S N FI + S++
Sbjct: 1 MASLTPRVLIKLLETMNTNIKVRGEYRSVLLQVISIVPALAGSELWPNQGFFIKVSDSSH 60
Query: 232 SGYVSISNPFNSHLM 188
S YVS+SN N ++
Sbjct: 61 STYVSLSNEDNELIL 75
>At1g55440.1 68414.m06341 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 653
Score = 30.7 bits (66), Expect = 0.99
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Frame = -3
Query: 305 IYGTMPCELSVNIKCIHFGKSLDLFWICFHIQPIQFSFNVH-GYYR--VFSVTTEINYA- 138
+Y +PC +V+IKCI+ + + I H + F+ ++ G + V T ++NY
Sbjct: 227 LYTCLPCSHTVHIKCIYLPRVIQ---ITRHTHRLSFTLSLQPGDFSCGVCRKTVDVNYGQ 283
Query: 137 FAIIKALRFVTGSRRVFRN 81
++ IK + S RN
Sbjct: 284 YSCIKGCHYAVHSHCATRN 302
>At1g57870.1 68414.m06566 shaggy-related protein kinase kappa,
putative / ASK-kappa, putative similar to shaggy-related
protein kinase kappa SP:Q39019 GI:717180 from
[Arabidopsis thaliana]
Length = 420
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 563 YRRLYIYK*CQ*LGKYPACCSLLYLDILAAQPIIN-HYHSRKM 688
Y +LY Y+ C+ L CC L + DI ++N H H K+
Sbjct: 182 YVKLYTYQICRGLAYLHNCCGLCHRDIKPQNLLVNPHTHQLKI 224
>At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B
light-insensitive protein, putative similar to ULI3
(UV-B light insensitive) [Arabidopsis thaliana]
GI:17225050; contains Pfam profile PF03107: DC1 domain
Length = 656
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 338 CHNRIEGQK*TIYGTMPCELSVNIKCIHFGKSLD 237
C NRI G Y + CEL ++ CIH K ++
Sbjct: 142 CKNRILGSS---YSCLGCELYFHVGCIHLSKEVN 172
>At3g26550.1 68416.m03314 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 681
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -2
Query: 231 LDMFPYPTHSILI*CSRLLPSVFCH 157
L ++ +PTH + I C RL+ ++F H
Sbjct: 168 LRLYSHPTHMVCICCGRLVSNMFYH 192
>At3g27490.1 68416.m03437 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 682
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -3
Query: 341 SCHNRIEGQK*TIYGTMPCELSVNIKCIH---FGKSLDLFWICFHIQPIQFSF 192
+CH + K +Y C+L+++I CI F S D + +H PIQ +
Sbjct: 90 NCHLCGKYTKSILYHCSDCKLNLDIDCISHHIFAASKDHLLVSWHHHPIQICY 142
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Frame = -3
Query: 227 ICFHIQ-PIQFSFNVHGYYRVFSVTT-----EINYAFAIIKALRFVTGSRRVFRNY 78
+CFH + PI + + G R++ TT +NY + A+ ++ SRRV Y
Sbjct: 235 VCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYIKSSRRVVIGY 290
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Frame = -3
Query: 227 ICFHIQ-PIQFSFNVHGYYRVFSVTT-----EINYAFAIIKALRFVTGSRRVFRNY 78
+CFH + PI + + G R++ TT +NY + A+ ++ SRRV Y
Sbjct: 235 VCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYIKSSRRVVIGY 290
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Frame = -3
Query: 227 ICFHIQ-PIQFSFNVHGYYRVFSVTT-----EINYAFAIIKALRFVTGSRRVFRNY 78
+CFH + PI + + G R++ TT +NY + A+ ++ SRRV Y
Sbjct: 235 VCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYIKSSRRVVIGY 290
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Frame = -3
Query: 227 ICFHIQ-PIQFSFNVHGYYRVFSVTT-----EINYAFAIIKALRFVTGSRRVFRNY 78
+CFH + PI + + G R++ TT +NY + A+ ++ SRRV Y
Sbjct: 235 VCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYIKSSRRVVIGY 290
>At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3
Pfam PF00400: WD domain, G-beta repeats;
Length = 1327
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = -1
Query: 391 NLNMLRCLETSNLFE*RHATIESKAKNKLSMVPCRASSVSTLNVFILENHSTYSGYVSIS 212
NL++L C++ S+++ H T + L+ C SS+ V L H Y ++
Sbjct: 266 NLDILTCVKDSHIWSIEHPTYSA-----LTRPLCELSSLVPPQV--LATHRKLRVYCMVA 318
Query: 211 NPFNSHLMFT 182
+P HL+ T
Sbjct: 319 HPLQPHLVAT 328
>At4g30850.2 68417.m04378 expressed protein contains Pfam domain,
PF03006: Uncharacterised protein family (Hly-III /
UPF0073)
Length = 358
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = -3
Query: 242 LDLFWICFHIQPIQFSFNVHGYYRVFSVTT 153
+ L +C PI ++F+ H Y+R+F +++
Sbjct: 201 ISLMIVCSFFAPIYYAFSCHTYWRLFYLSS 230
>At4g30850.1 68417.m04377 expressed protein contains Pfam domain,
PF03006: Uncharacterised protein family (Hly-III /
UPF0073)
Length = 358
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = -3
Query: 242 LDLFWICFHIQPIQFSFNVHGYYRVFSVTT 153
+ L +C PI ++F+ H Y+R+F +++
Sbjct: 201 ISLMIVCSFFAPIYYAFSCHTYWRLFYLSS 230
>At3g45780.1 68416.m04953 protein kinase / nonphototropic hypocotyl
protein 1 (NPH1) / phototropin identical to SP|O48963
Nonphototropic hypocotyl protein 1 (EC 2.7.1.37)
(Phototropin) {Arabidopsis thaliana}, cDNA
nonphototropic hypocotyl 1 (NPH1) GI:2832240; contains
Pfam profiles PF00069:Protein kinase domain and
PF00785:PAC motif
Length = 996
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 284 ELSVNIKCIHFGKSLDLFWICFHIQPIQ 201
+ V ++ I++ KS FW FH+QP++
Sbjct: 535 QTEVTVQLINYTKSGKKFWNIFHLQPMR 562
>At2g02710.3 68415.m00213 PAC motif-containing protein similar to
nonphototropic hypocotyl 1 [Zea mays] GI:2687358;
contains Pfam profile PF00785: PAC motif
Length = 358
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 284 ELSVNIKCIHFGKSLDLFWICFHIQPI 204
E SV + +++ KS FW+ FH+ P+
Sbjct: 97 ERSVQVSLLNYRKSGSPFWMLFHMCPV 123
>At2g02710.2 68415.m00212 PAC motif-containing protein similar to
nonphototropic hypocotyl 1 [Zea mays] GI:2687358;
contains Pfam profile PF00785: PAC motif
Length = 397
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 284 ELSVNIKCIHFGKSLDLFWICFHIQPI 204
E SV + +++ KS FW+ FH+ P+
Sbjct: 97 ERSVQVSLLNYRKSGSPFWMLFHMCPV 123
>At2g02710.1 68415.m00211 PAC motif-containing protein similar to
nonphototropic hypocotyl 1 [Zea mays] GI:2687358;
contains Pfam profile PF00785: PAC motif
Length = 399
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 284 ELSVNIKCIHFGKSLDLFWICFHIQPI 204
E SV + +++ KS FW+ FH+ P+
Sbjct: 97 ERSVQVSLLNYRKSGSPFWMLFHMCPV 123
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,855,483
Number of Sequences: 28952
Number of extensions: 271292
Number of successful extensions: 607
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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