Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0438
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65340.1 68414.m07409 cytochrome P450, putative similar to cy...    31   0.93 
At2g23180.1 68415.m02769 cytochrome P450, putative                     30   1.6  
At3g50710.1 68416.m05548 F-box family protein contains F-box dom...    29   3.7  
At4g39510.1 68417.m05587 cytochrome P450 family protein contains...    27   8.6  

>At1g65340.1 68414.m07409 cytochrome P450, putative similar to
           cytochrome P450 GI:4688670 from [Catharanthus roseus]
          Length = 503

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 661 HWPIFALLQSILTHNPLKYGGSNILETVKLGRLLFIFKGPCL 536
           +WP   +L  +L   P  Y    I E ++   + F FKGPCL
Sbjct: 36  NWPALGMLPGLLLQVPRIYDW--ITEVLEATDMTFCFKGPCL 75


>At2g23180.1 68415.m02769 cytochrome P450, putative
          Length = 516

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 661 HWPIFALLQSILTHNPLKYGGSNILETVKLGRLLFIFKGPC 539
           +WP   +L  +L   P  Y    + E ++   L + FKGPC
Sbjct: 36  NWPFLGMLPGLLVEIPRVY--DFVTELLEASNLTYPFKGPC 74


>At3g50710.1 68416.m05548 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 427

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -3

Query: 414 LEEV*FSLDYFCD*EDLEVWVNIS--RNINQLNYSFLKLYLLNH 289
           LE V F++   C  ED+  W+ I   RN+ +L  S  + Y   H
Sbjct: 76  LETVKFNVGPCCSSEDIATWIRIGMVRNMRELEISHCEGYFREH 119


>At4g39510.1 68417.m05587 cytochrome P450 family protein contains
           Pfam PF00067: Cytochrome P450; similar to  Cytochrome
           P450 86A2 (SP:O23066) [Arabidopsis thaliana]
          Length = 508

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -2

Query: 661 HWPIFALLQSILT--HNPLKYGGSNILETVKLGRLLFIFKGP 542
           +WP+  +L   L   H    +G    +E +++  L F+FKGP
Sbjct: 34  NWPVIGMLPGFLMVLHRIYNFG----VEALEMSHLTFLFKGP 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,330,944
Number of Sequences: 28952
Number of extensions: 195297
Number of successful extensions: 326
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)