Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0435
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    28   1.1  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    26   4.3  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   4.3  
SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit...    25   10.0 
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   10.0 

>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -1

Query: 160 TRDAICTKYGLIF*H*FILHKSLLTNIN*YYYF 62
           +R++I     +IF +  +LH+++L N N +YYF
Sbjct: 402 SRESIIRSANIIFTNPDMLHQTILPNANRWYYF 434


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/50 (22%), Positives = 30/50 (60%)
 Frame = -2

Query: 231 KLVYPLRLLAIFEIITHYYEILRSQETLSVQNMA*YSDINLFYINHF*LI 82
           +L++PL +L +  +++++  +  S+   +   +A  + IN+F++  + LI
Sbjct: 329 RLLFPLCILLVLYLVSNFLSVGVSRRLANTPYVANVAFINMFFLTIYILI 378


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 167  CGHKRRYLYKIWLNILTLIYFT*IT-FN*YKLILLFSSLII 48
            CG +  + Y+I    +TL++F  ++  N Y L + F  L+I
Sbjct: 1509 CGEESYWYYRITFVDMTLLFFRNVSDANLYSLPMFFGELLI 1549


>SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit
           Tom40|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 338 KLS*GCETIWRKVQGSNAPARRDISKLSQF 249
           KLS G E +W+K   S  P    +S ++++
Sbjct: 177 KLSLGVEALWQKPSSSIGPEEATLSYMTRY 206


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 258 LTVHPSVVMKLVYPLRLLAIFEIITHYYEILRS 160
           LT++   V KLV  + LL   E IT Y E LR+
Sbjct: 850 LTINDPKVQKLVLDIILLYSEEAITTYEENLRN 882


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,168
Number of Sequences: 5004
Number of extensions: 49933
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)