Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0435
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92827-7|CAB07324.1|  368|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z92827-4|CAB07323.1|  722|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z92830-9|CAB07361.2|  461|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U14524-1|AAA50785.1|  461|Caenorhabditis elegans avermectin-sens...    27   9.2  

>Z92827-7|CAB07324.1|  368|Caenorhabditis elegans Hypothetical
           protein C29F7.4 protein.
          Length = 368

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = +3

Query: 270 ISPSRSIASLNLPPNRFAALGELSARNSMDL-----G*YAFFL 383
           + PS  I+ L  PP  + AL  L+ RN+ D+     G YAF L
Sbjct: 54  VQPSADISDLRRPPISYVALCALACRNAPDMKITPAGVYAFIL 96


>Z92827-4|CAB07323.1|  722|Caenorhabditis elegans Hypothetical
           protein C29F7.5 protein.
          Length = 722

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = +3

Query: 270 ISPSRSIASLNLPPNRFAALGELSARNSMDL-----G*YAFFL 383
           + PS  I+ L  PP  + AL  L+ RN+ D+     G YAF L
Sbjct: 408 VQPSADISDLRRPPISYVALCALACRNAPDMKITPAGVYAFVL 450


>Z92830-9|CAB07361.2|  461|Caenorhabditis elegans Hypothetical
           protein F11A5.10 protein.
          Length = 461

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -1

Query: 481 VTY*QQMASTVDHPFFLQYYPYNFADDRIS*AIRKKAY*PKSIEFL-AESSPRAAK 317
           V Y  +++  +  P +LQYYP +     I   +   AY  K IE+L  E SP   K
Sbjct: 179 VLYSVRISLVLSCPMYLQYYPMDVQQCSID--LASYAYTTKDIEYLWKEHSPLQLK 232


>U14524-1|AAA50785.1|  461|Caenorhabditis elegans
           avermectin-sensitive glutamate-gated chloride channel
           GluCl alpha protein.
          Length = 461

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -1

Query: 481 VTY*QQMASTVDHPFFLQYYPYNFADDRIS*AIRKKAY*PKSIEFL-AESSPRAAK 317
           V Y  +++  +  P +LQYYP +     I   +   AY  K IE+L  E SP   K
Sbjct: 179 VLYSVRISLVLSCPMYLQYYPMDVQQCSID--LASYAYTTKDIEYLWKEHSPLQLK 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,797,883
Number of Sequences: 27780
Number of extensions: 269392
Number of successful extensions: 533
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)