Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0435
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex...    28   6.6  
At5g03200.1 68418.m00268 zinc finger (C3HC4-type RING finger) fa...    27   8.7  

>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
           extensin family protein contains similarity to disease
           resistance protein GI:3894383 from [Lycopersicon
           esculentum]; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 847

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/72 (27%), Positives = 33/72 (45%)
 Frame = -3

Query: 596 NVYIGCLANSCSL*NNITIL*NDKTTNLFI*ILLPCFSSNLLTTDGINCRSSVFFTVLSI 417
           N   GC  N   L NN+T+   D + N F+   LP   S L + + ++   +     +  
Sbjct: 259 NNLTGCFPNEIGLLNNVTVF--DASKNGFV-GSLPSTLSGLASVEQLDLSHNKLTGFVVD 315

Query: 416 QFCRRQNIVSNK 381
           +FC+  N+ S K
Sbjct: 316 KFCKLPNLDSFK 327


>At5g03200.1 68418.m00268 zinc finger (C3HC4-type RING finger)
           family protein contains weak similarity to zinc finger
           proteins
          Length = 337

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 264 ANISPSRSIASLNLPPNRF 320
           +NI P+   A L LPPNRF
Sbjct: 17  SNIPPAMETAPLELPPNRF 35


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,756,579
Number of Sequences: 28952
Number of extensions: 240889
Number of successful extensions: 473
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)