Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0434
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                34   0.11 
SB_44364| Best HMM Match : Metallothionein (HMM E-Value=6.1)           31   0.60 
SB_11586| Best HMM Match : CLN3 (HMM E-Value=8.3e-10)                  30   1.4  
SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.4  
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_55436| Best HMM Match : ig (HMM E-Value=1.2e-24)                    28   5.6  
SB_55110| Best HMM Match : Squash (HMM E-Value=0.21)                   28   5.6  
SB_51675| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_30968| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_41869| Best HMM Match : Laminin_EGF (HMM E-Value=9.7e-23)           28   7.4  
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 28   7.4  
SB_52148| Best HMM Match : EGF (HMM E-Value=0)                         27   9.7  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +1

Query: 190 DGIRCGQLICQLDEYCSPETNRCAPCNVVCNKTH---HNYDSG 309
           D   CG+  C+ DE+    T+RC P + VC+ T+    NYD G
Sbjct: 118 DESTCGEGTCRPDEWHCIGTSRCIPLSRVCDGTNDCGDNYDEG 160


>SB_44364| Best HMM Match : Metallothionein (HMM E-Value=6.1)
          Length = 202

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +1

Query: 178 QITLDGIRCGQLICQLDEYCSPETNRCAPCNVVCNKTHHNYDSGLCVKECQ 330
           ++ L  I CG   C  ++ C PET  C    + C   + N+     +  CQ
Sbjct: 114 ELRLSRILCG---CSCEDECYPETCECILNGIGCQVDYGNFPCSCSISNCQ 161


>SB_11586| Best HMM Match : CLN3 (HMM E-Value=8.3e-10)
          Length = 507

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 563 VKSLGYCFTRFLAGWN 516
           V+  GYCFTR L GWN
Sbjct: 482 VEDTGYCFTRSLHGWN 497


>SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1033

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = +1

Query: 163 GVASAQITLDGIRCGQLICQLDEY-CSPETNRCAPCNVVCN---KTHHNYDSGLC 315
           GV   +  LD +RCG  +C L+   C  +  + +     C    K   ++DSGLC
Sbjct: 251 GVKDCEHGLDELRCGSSVCPLNSLNCKDKHKQKSQSGEKCRFSFKGRCDFDSGLC 305


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 22/83 (26%), Positives = 31/83 (37%)
 Frame = +1

Query: 34   GFEVKIQI*KVSYHSACVCSCENVHGALEKREMSGFVCVLMLAGVASAQITLDGIRCGQL 213
            GF  K       + +     CEN H        SG  C   + G+  ++    G  C + 
Sbjct: 896  GFTCKANCTPGQFKNTATRVCENCHPTCASCSSSGPKCTSCIPGLVLSE---KGGVC-ES 951

Query: 214  ICQLDEYCSPETNRCAPCNVVCN 282
             C    Y S +   C PC+V CN
Sbjct: 952  ECSKGRYKSGDA--CKPCHVSCN 972


>SB_55436| Best HMM Match : ig (HMM E-Value=1.2e-24)
          Length = 703

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 238 SPETNRCAPCNVVCNKTHHNY 300
           S ETN  +P N++CN  H +Y
Sbjct: 640 SLETNTASPPNIICNSGHASY 660


>SB_55110| Best HMM Match : Squash (HMM E-Value=0.21)
          Length = 573

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 214 ICQLDEYCSPETNRCAP 264
           +C+  EYC P  NRC P
Sbjct: 267 VCKSTEYCHPVLNRCLP 283


>SB_51675| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 689

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 75  QCLCLFLRKCTRCFREERDVGIRVCPDARWRRLRSNHPGRHQMRSA 212
           Q L   + K   C+  E  +    CP  +W+++  N PG HQ   A
Sbjct: 516 QSLLTRIEKSRTCW--EAGIDYHWCPCLKWKQVSVNTPGIHQSAEA 559


>SB_30968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 238 SPETNRCAPCNVVCNKTHHN 297
           SP T    PC   C K HHN
Sbjct: 64  SPFTKHKRPCTAPCRKAHHN 83


>SB_41869| Best HMM Match : Laminin_EGF (HMM E-Value=9.7e-23)
          Length = 198

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/46 (32%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
 Frame = +1

Query: 199 RCGQLICQ-LDEYCSPETNRCAPCNVVCNKTHHNYDSGLCVKECQG 333
           RC    C     +C PET  C  C +      H Y   LC    QG
Sbjct: 14  RCVLCSCNDRSRFCHPETGVCTDCKI----GTHGYRCELCTNNVQG 55


>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1706

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/46 (32%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
 Frame = +1

Query: 199  RCGQLICQ-LDEYCSPETNRCAPCNVVCNKTHHNYDSGLCVKECQG 333
            RC    C     +C PET  C  C +      H Y   LC    QG
Sbjct: 1004 RCVLCSCNDRSRFCHPETGVCTDCKI----GTHGYRCELCTNNVQG 1045


>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1055

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +1

Query: 88  CSCENVHGALEKREMSGFVCVLMLAGVASAQITLDGIRCGQLICQLDEYCSPETNRC 258
           C C   H   +K  ++  VC        +  +TLDG RC +   Q  + C  E+N C
Sbjct: 691 CKCGQRHCG-DKSNLTNNVCQFSHCIHGNCMVTLDGHRCARCSEQAMDPC--ESNPC 744


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +1

Query: 172 SAQITLDGIRCGQLICQLDEYCSPETNRCAPCNVVCNKTHHNY 300
           +A  T DG+ C      +DE CS  TN CAP    C     +Y
Sbjct: 581 NAGYTGDGVTC----TDIDE-CSDGTNTCAPIGSSCTNNAGSY 618


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,001,191
Number of Sequences: 59808
Number of extensions: 457032
Number of successful extensions: 1172
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)