Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0434
(640 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g14920.1 68415.m01697 sulfotransferase family protein similar... 32 0.37
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 29 2.6
At3g09770.2 68416.m01158 zinc finger (C3HC4-type RING finger) fa... 29 3.4
At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger) fa... 29 3.4
At1g76350.1 68414.m08871 RWP-RK domain-containing protein simila... 29 3.4
At3g12610.1 68416.m01570 DNA-damage-repair/toleration protein, p... 28 4.5
At2g07678.1 68415.m00915 hypothetical protein 28 4.5
At5g40950.1 68418.m04975 50S ribosomal protein L27, chloroplast,... 27 7.9
At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB) 27 7.9
>At2g14920.1 68415.m01697 sulfotransferase family protein similar to
steroid sulfotransferase from [Brassica napus]
GI:3420008, GI:3420004; contains Pfam profile PF00685:
Sulfotransferase domain
Length = 333
Score = 31.9 bits (69), Expect = 0.37
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 520 QPAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPD 633
Q +K+ ++ + + L HHNPH P + +L L+ PD
Sbjct: 91 QRSKHSLEDHQHPLLHHNPHEIVPNLELDLYLKSSKPD 128
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/64 (20%), Positives = 31/64 (48%)
Frame = +1
Query: 97 ENVHGALEKREMSGFVCVLMLAGVASAQITLDGIRCGQLICQLDEYCSPETNRCAPCNVV 276
E ++++ E + + + ++T+ + CG ++C+ +CS +RC C +
Sbjct: 4642 ERAEASMKEAETAKSQWLCQICQTKEVEVTI--VPCGHVLCR---HCSTSVSRCPFCRLQ 4696
Query: 277 CNKT 288
N+T
Sbjct: 4697 VNRT 4700
>At3g09770.2 68416.m01158 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 341
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +1
Query: 523 PAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDP 636
P N V QYP HH P P P + L+ P P
Sbjct: 59 PNPNPVYQYPASYYHHPPPGAMPLPPYDHHLQHHPPHP 96
>At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 388
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +1
Query: 523 PAKNRVKQYPNDLTHHNPHAEAPKPKPELKLEIRNPDP 636
P N V QYP HH P P P + L+ P P
Sbjct: 59 PNPNPVYQYPASYYHHPPPGAMPLPPYDHHLQHHPPHP 96
>At1g76350.1 68414.m08871 RWP-RK domain-containing protein similar
to nodule inception protein [Lotus japonicus]
GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
Length = 808
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +2
Query: 167 SPPLKSPWTASDAVS*YVS*TNTAPRRPTDALRAMLSAIKHTITT 301
SPP KSP ++ S S T PTD R + + K T TT
Sbjct: 655 SPPAKSPGSSCSHSSSCSSETQVIKEDPTDKTRLVSRSFKETQTT 699
>At3g12610.1 68416.m01570 DNA-damage-repair/toleration protein,
putative (DRT100) similar to
DNA-damage-repair/toleration protein DRT100 [Precursor]
SWISS-PROT:Q00874, NCBI_gi:5701788; contains multiple
LRR repeats Pfam profile: PF00560
Length = 372
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -1
Query: 142 RIPTSLSSLKHRVHFRRNRHKHCGMILSKFEF 47
RIP SLSS K H + +K CG I + F F
Sbjct: 318 RIPDSLSSAKFVGHLDISHNKLCGRIPTGFPF 349
>At2g07678.1 68415.m00915 hypothetical protein
Length = 245
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 66 YFLNLNFNFKAPRGLTGNN 10
Y NLN +F +P G TGNN
Sbjct: 51 YIKNLNLDFTSPYGSTGNN 69
>At5g40950.1 68418.m04975 50S ribosomal protein L27, chloroplast,
putative (RPL27) identical to SP|Q9FLN4 ribosomal
protein L27, chloroplast precursor {Arabidopsis
thaliana}; similar to SP|P30155 50S ribosomal protein
L27, chloroplast precursor (CL27) {Nicotiana tabacum}
Length = 198
Score = 27.5 bits (58), Expect = 7.9
Identities = 8/36 (22%), Positives = 20/36 (55%)
Frame = +1
Query: 511 QKFQPAKNRVKQYPNDLTHHNPHAEAPKPKPELKLE 618
+KF P + ++ YP ++ NP++ + + +L+
Sbjct: 127 EKFGPDRKKISVYPREIVPENPNSYRARKRENFRLQ 162
>At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)
Length = 178
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 56 FRKYHTTVLVSVPAKMYTVL*RRERCRDSCVS*CSLASPPLK 181
+++Y T L +MYT + R R R C+ A+ P K
Sbjct: 93 YKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVPAK 134
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,240,422
Number of Sequences: 28952
Number of extensions: 291557
Number of successful extensions: 794
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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