Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0432
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    29   0.84 
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy...    27   3.4  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    26   4.5  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    26   5.9  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   7.8  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    25   7.8  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    25   7.8  

>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +2

Query: 380 LDVGTYGYDNVTNVCPYTLNVFDLNTD--QIIRKYVLRPEDIVSTTF-IANIALDIGT 544
           L+ G +G D V  VCP+  N+F +  D    I KY+  P+ +  + + IA   L I T
Sbjct: 451 LNSGAFGLDEVFQVCPFKSNIFYVLKDVPWSITKYL--PQALQHSGYLIAEDTLQINT 506


>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +2

Query: 488 PEDIVSTT-FIANIALDIGTSCEDTFAYFSDELGYGLIAYSWEQNKSWEI*PQLFHARPS 664
           P+ I STT  I ++AL  G   +      S   G  L+    +++      PQL+H+ PS
Sbjct: 106 PQGIESTTQSICDLALRFGEGEDGEERIMSRPFGVALLIAGIDEHG-----PQLYHSEPS 160

Query: 665 RR*FQY 682
              F+Y
Sbjct: 161 GTYFRY 166


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 404 DNVTNVCPYTLNVFDLNTDQIIRK 475
           +++T VCP       +NT+QI+RK
Sbjct: 110 EHITGVCPILTADMLVNTEQIVRK 133


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 148 RTARWYRKVEEQIVRQRS*VALR-YPSYFELHSTGRSI*TIPEI 276
           R  R Y K  EQ++R    VA R +P  F+L  T R+  T P+I
Sbjct: 513 RLDRVYYK-PEQVIRANEEVAWRSFPPTFDLTITPRATTTTPDI 555


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 564 PTSPMNWAMVSSLTRGNRTSHGRFSH 641
           P+SP+ W+++S   R     H R+ +
Sbjct: 330 PSSPIQWSLISKNMRNRHRHHCRWKY 355


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = +2

Query: 410 VTNVCPYTLNVFDLNTDQIIRKYV 481
           +TN+ P+T  ++DL  ++I+R+Y+
Sbjct: 399 LTNLEPHTTFLWDLEENRIVRQYM 422


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +1

Query: 73  VVDWQLPGPVLEAAGSQDWCSDTRERTARWY 165
           V+ W +PG  LE      W   + E    WY
Sbjct: 373 VLVWAIPGMSLEYLRETGWVFSSTETNVPWY 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,601
Number of Sequences: 5004
Number of extensions: 66506
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)