Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0432
(696 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27648| Best HMM Match : Ribosomal_L18ae (HMM E-Value=2.8) 31 1.2
SB_34765| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_57887| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_11701| Best HMM Match : Dpy-30 (HMM E-Value=0.29) 29 3.6
SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15) 29 3.6
SB_22927| Best HMM Match : SerH (HMM E-Value=1.1) 29 4.8
SB_25197| Best HMM Match : TatC (HMM E-Value=1.8) 29 4.8
SB_11594| Best HMM Match : F5_F8_type_C (HMM E-Value=4.4e-35) 29 4.8
SB_42860| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 28 8.3
SB_46355| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_30925| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_18056| Best HMM Match : Xan_ur_permease (HMM E-Value=0.96) 28 8.3
SB_12922| Best HMM Match : MFS_1 (HMM E-Value=1.1) 28 8.3
>SB_27648| Best HMM Match : Ribosomal_L18ae (HMM E-Value=2.8)
Length = 796
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -2
Query: 683 DIEITDERVGHEIAVAKSPMTCSVPTSKR*DHSPVHRRSRQRCPHSWYRYRE 528
D D R HE+AVA SP+ C T P ++ C H W +E
Sbjct: 326 DTNGADTRCQHEVAVADSPVVCP-QTHTGESAIPDNQIVNTACQHKWRNLKE 376
>SB_34765| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Frame = +2
Query: 110 QQALRTGALIPE---NALPVGIERWRNKLFVS---VPRWRSGIPATLNYIPLDAPYEPSP 271
+ L G+ PE N +E+W N+ + +P++ + P +P+ P EP+P
Sbjct: 57 EATLLDGSKSPEQKANETIEAVEKWENQPEMESTPLPKYYTSPPEDERPLPITLPSEPAP 116
Query: 272 KLTPYP 289
L YP
Sbjct: 117 TLEHYP 122
>SB_57887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 131 ALIPENALPVGIERWRNKLFVSVPRWRSGIPATLNYIP 244
ALIP +E R K+ S+PR R I +LN IP
Sbjct: 18 ALIPGGVKSTLLENLREKVDKSIPRDRHSIAESLNQIP 55
>SB_11701| Best HMM Match : Dpy-30 (HMM E-Value=0.29)
Length = 355
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +2
Query: 26 TSISNDKAPSKYSRGTWSTGNYPDQFSKQQALRTGALIPENALPVGIERWRNKLFVSVPR 205
T +SN A Y + W++ N+P + +R IPE L + + WR F S R
Sbjct: 186 TKLSNFTAKRLYKKPPWTSFNHPIVW-----IRALPWIPEKQLKMQRDTWRENKFTSCLR 240
Query: 206 WRSG 217
G
Sbjct: 241 GFGG 244
>SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)
Length = 430
Score = 29.1 bits (62), Expect = 3.6
Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 7/110 (6%)
Frame = +2
Query: 266 SPKLTPYPSFEGNELGNCQTGLTTVYRVKADQCDRL-----WVLDVGTYGYDNVTNVCPY 430
+PK + P+ EGN G C + T V+ ++C R W Y D CP
Sbjct: 233 NPKTSCMPTHEGNSNGACCSFPFTYKGVEQNRCIRTERNFRWCATTNNYDNDKDWGFCPL 292
Query: 431 TL--NVFDLNTDQIIRKYVLRPEDIVSTTFIANIALDIGTSCEDTFAYFS 574
NV + ++ + + ++ N+ + + T C + + S
Sbjct: 293 CACRNVHSVRVLLCVQCVGVVMSSVRGCRYVHNVRVSLCTLCAFRYVHSS 342
>SB_22927| Best HMM Match : SerH (HMM E-Value=1.1)
Length = 678
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -2
Query: 176 STFRYQRAVRSLVSEHQS*EPAASRTGPGSCQSTTFHENICLEL 45
+TF Q AV LVS H + A+ P S +STT ++ L L
Sbjct: 387 ATFVTQSAVVDLVSSHTTSSSTAAMESPTSKESTTGSSSLALGL 430
>SB_25197| Best HMM Match : TatC (HMM E-Value=1.8)
Length = 622
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 263 PSPKLTPYPSFEGNELGNCQTGLTTVY 343
PSP +T YPS +LGN T + V+
Sbjct: 85 PSPNITSYPSLMTLKLGNFTTATSVVF 111
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 263 PSPKLTPYPSFEGNELGNCQTGLTTVY 343
PSP +T YPS ELGN + + V+
Sbjct: 274 PSPNITSYPSLMTLELGNFTSATSVVF 300
>SB_11594| Best HMM Match : F5_F8_type_C (HMM E-Value=4.4e-35)
Length = 1814
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 44 KAPSKYSRGTWSTGNYPDQFSKQQALRTGALIPENALPVG 163
K +Y+ G+W+ + QA + G IP+ AL +G
Sbjct: 682 KIRPRYANGSWAFSVNGPTLKQGQAFKAGTKIPDGALMIG 721
>SB_42860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 28.3 bits (60), Expect = 6.3
Identities = 22/62 (35%), Positives = 32/62 (51%)
Frame = +1
Query: 145 ERTARWYRKVEEQIVRQRS*VALRYPSYFELHSTGRSI*TIPEINALPELRRQRIRQLSN 324
E+ A+ RK+ ++ R+RS +A R + E HST R I P + E +R Q S
Sbjct: 102 EKLAKQARKLAYKMARERSSIAKRTMAEKESHSTFRII-KFPSVPEAGE-KRSTDTQNSK 159
Query: 325 RT 330
RT
Sbjct: 160 RT 161
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 263 PSPKLTPYPSFEGNELGNCQTGLTTVYRVKADQCDRL 373
PSP +T YPS + +GN + + V+ RL
Sbjct: 843 PSPNITSYPSLTTSAVGNFTSATSVVFDSTTPNATRL 879
>SB_46355| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Frame = -2
Query: 668 DERVGHEIAVAKSPMTCSVPTSKR*DHS--PVHRRSRQRCPHSWYRYRE 528
D R HE+A A SP+ C S P ++ C H W +E
Sbjct: 62 DTRCQHEVAAADSPVVCLPERQTHSGESAIPDNQIVDTECQHKWRNLKE 110
>SB_30925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 209
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 8 FLWASLTSISNDKAPSKYSRGTWSTGNYP 94
F+W ++ S K PSK + GT+STG P
Sbjct: 74 FMWLTIKEPSRTK-PSKSTIGTYSTGTSP 101
>SB_18056| Best HMM Match : Xan_ur_permease (HMM E-Value=0.96)
Length = 651
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 263 PSPKLTPYPSFEGNELGNCQTGLTTVY 343
PSP +T YPS LGN T + V+
Sbjct: 319 PSPNITSYPSLMTLALGNFTTATSVVF 345
>SB_12922| Best HMM Match : MFS_1 (HMM E-Value=1.1)
Length = 473
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 263 PSPKLTPYPSFEGNELGNCQTGLTTVY 343
PSP + YPS ELGN T + V+
Sbjct: 4 PSPNIKSYPSLMTLELGNFTTATSVVF 30
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 263 PSPKLTPYPSFEGNELGNCQTGLTTVY 343
PSP + YPS ELGN T + V+
Sbjct: 382 PSPNIKSYPSLMTLELGNFTTATSVVF 408
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,962,566
Number of Sequences: 59808
Number of extensions: 528444
Number of successful extensions: 1404
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1402
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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