Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0432
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14840.2 68416.m01875 leucine-rich repeat family protein / pr...    31   0.96 
At5g54010.1 68418.m06718 glycosyltransferase family protein cont...    29   2.9  
At3g49800.1 68416.m05445 BSD domain-containing protein contains ...    28   6.8  
At3g11700.1 68416.m01434 beta-Ig-H3 domain-containing protein / ...    28   6.8  

>At3g14840.2 68416.m01875 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain; contains 2 predicted transmembrane domains
          Length = 988

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +2

Query: 32  ISNDKAPSKYSRGTWSTGNYPDQFSKQQALRTGALIPENALPVGIERWRN 181
           ++N+   +KY   TW T  Y D  +   +  TG  + ++    G  +W N
Sbjct: 380 VANNSNETKYDADTWDTPGYYDSKNGWVSSNTGNFLDDDRTNNGKSKWSN 429


>At5g54010.1 68418.m06718 glycosyltransferase family protein
           contains Pfam profile: PF00201 UDP-glucoronosyl and
           UDP-glucosyl transferase
          Length = 453

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = -3

Query: 604 VSDETIAQFIGEVGKGVLTAGTDIESDVGNESRRDNVFWS*HVFTDDLISVQV-KYIERV 428
           V  E    F  E   G + +  D +S++GN +RR++V W   +    L+S  + K++E +
Sbjct: 384 VKREETGWFSKESLSGAVRSVMDRDSELGNWARRNHVKWKESLLRHGLMSGYLNKFVEAL 443

Query: 427 RAHICNV 407
              + N+
Sbjct: 444 EKLVQNI 450


>At3g49800.1 68416.m05445 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 428

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 23/62 (37%), Positives = 26/62 (41%)
 Frame = +2

Query: 104 SKQQALRTGALIPENALPVGIERWRNKLFVSVPRWRSGIPATLNYIPLDAPYEPSPKLTP 283
           S  Q L + AL+    L     R RNK  V VP        + N  PL  P  PSPK  P
Sbjct: 256 STPQVLESRALLSHELL-----RKRNKDTVVVPESSDRGADSENVEPLFQPTNPSPKSEP 310

Query: 284 YP 289
            P
Sbjct: 311 EP 312


>At3g11700.1 68416.m01434 beta-Ig-H3 domain-containing protein /
           fasciclin domain-containing protein contains Pfam
           profile PF02469: Fasciclin domain
          Length = 462

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +2

Query: 95  DQFSKQQALRT-GALIPENALPVGIERWRNKLFVSVPRWRSGIPATLNYIPLDAPYEPSP 271
           + F++++ LR+  A++PE A  +     R K   +     +G P  L   P+++   P P
Sbjct: 192 EDFNRRRNLRSISAVLPEGAPEIDPRTNRLKKSATAVSVPAGSPPVL---PIESAMAPGP 248

Query: 272 KLTPYPS 292
            L P P+
Sbjct: 249 SLAPAPA 255


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,864,403
Number of Sequences: 28952
Number of extensions: 358691
Number of successful extensions: 1023
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)