Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0431
         (770 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q02WG2 Cluster: SAM-dependent methyltransferase; n=3; L...    36   1.1  
UniRef50_Q17779 Cluster: Putative uncharacterized protein; n=2; ...    36   1.1  
UniRef50_Q8IC23 Cluster: Putative uncharacterized protein PF07_0...    35   2.6  
UniRef50_Q97YE8 Cluster: Putative uncharacterized protein; n=1; ...    34   4.5  
UniRef50_Q4N3A8 Cluster: Putative uncharacterized protein; n=2; ...    33   5.9  
UniRef50_P21421 Cluster: DNA-directed RNA polymerase subunit bet...    33   5.9  

>UniRef50_Q02WG2 Cluster: SAM-dependent methyltransferase; n=3;
           Lactococcus lactis|Rep: SAM-dependent methyltransferase
           - Lactococcus lactis subsp. cremoris (strain SK11)
          Length = 273

 Score = 35.9 bits (79), Expect = 1.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 247 FEARVNQLVTQNNHKYICNNKGFINFFRLNA 155
           F+   N L  QNNH Y  N KG++NF +  A
Sbjct: 28  FQLETNALKCQNNHTYNLNKKGYVNFLQTKA 58


>UniRef50_Q17779 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 325

 Score = 35.9 bits (79), Expect = 1.1
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 731 LPRKERIIHQFYFILFFIDRHRHLFIFCHFHHNGSKV 621
           LP    II Q + +LF I RH H F + +  H+G  V
Sbjct: 98  LPHLRLIIFQLFLVLFLIPRHHHNFCYFYSTHDGQNV 134


>UniRef50_Q8IC23 Cluster: Putative uncharacterized protein
           PF07_0018; n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PF07_0018 - Plasmodium
           falciparum (isolate 3D7)
          Length = 1337

 Score = 34.7 bits (76), Expect = 2.6
 Identities = 20/50 (40%), Positives = 29/50 (58%)
 Frame = +2

Query: 296 LREKRKFQNFELVFIGGIDFISA*QLKCILRFHKYYIVNDVIQNTYLLKI 445
           L+EK+K +N  L     I FIS+   KCIL+   YY +  +I+N Y  K+
Sbjct: 96  LKEKKKIRNIYLF----IKFISS---KCILKMSTYYYIKYIIENIYEYKL 138


>UniRef50_Q97YE8 Cluster: Putative uncharacterized protein; n=1;
           Sulfolobus solfataricus|Rep: Putative uncharacterized
           protein - Sulfolobus solfataricus
          Length = 672

 Score = 33.9 bits (74), Expect = 4.5
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = -1

Query: 308 VFHANRFTMLKVLQLIVIDGVRSKSKSAS 222
           +FH N F+ +K +Q I+ +GVRSK + AS
Sbjct: 15  LFHVNAFSAIKEMQFILKNGVRSKDEKAS 43


>UniRef50_Q4N3A8 Cluster: Putative uncharacterized protein; n=2;
           Theileria|Rep: Putative uncharacterized protein -
           Theileria parva
          Length = 338

 Score = 33.5 bits (73), Expect = 5.9
 Identities = 19/44 (43%), Positives = 26/44 (59%)
 Frame = +1

Query: 490 NYYVNLSNAYVVIIARTRNSAFINIFLLFNYYNNIINKV*LYSV 621
           N   N SN Y+++I  T+NS  + +  L  YYNNIIN + L  V
Sbjct: 96  NIGYNKSNKYIIVI--TKNSKRVLLNWLSIYYNNIINVILLEKV 137


>UniRef50_P21421 Cluster: DNA-directed RNA polymerase subunit beta;
           n=5; Plasmodium|Rep: DNA-directed RNA polymerase subunit
           beta - Plasmodium falciparum
          Length = 1024

 Score = 33.5 bits (73), Expect = 5.9
 Identities = 17/56 (30%), Positives = 32/56 (57%)
 Frame = +1

Query: 421 SKYLSVKNINAFK*YRMAIHTFANYYVNLSNAYVVIIARTRNSAFINIFLLFNYYN 588
           SKY ++ NI + K + + ++ F N Y+NL N   ++ +   N ++ + F + N YN
Sbjct: 213 SKYNNINNIISLKLFIIKLNKFNNIYINLLN---ILFSIKLNFSYYSDFYINNIYN 265


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 674,732,549
Number of Sequences: 1657284
Number of extensions: 12773681
Number of successful extensions: 25134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25124
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64615845515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)