Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0431
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    27   3.0  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    26   6.9  
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch...    26   6.9  
SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta...    25   9.1  
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc...    25   9.1  

>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +1

Query: 475 IHTFANYYVNLSNAYVVIIARTRNSAFINIFLLFNYY--NNIINK 603
           +H F ++Y  LS    +I+A     +F N++L  + +  N+IINK
Sbjct: 148 LHNFQSFYQKLSLDSSLILALNNFWSFFNLYLTNSPHIMNDIINK 192


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 46  SYALS*DTHTIQTFRKNSSMAPMKQYANSKFVDLQEERLNEKS 174
           S+  + D+ ++    K   M    + A SKF + +EERL E +
Sbjct: 795 SHGFTMDSTSLSILAKFERMLLQNEEARSKFEETEEERLMENA 837


>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 743 FCTFLPRKERIIHQFYFILFFIDRHRHLFIFCHF 642
           F + L   +RI+H F+F +F    + H F+   F
Sbjct: 100 FLSVLIYLDRIVHHFHFTVFINSFNIHRFLIAGF 133


>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
           Taf4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 535 RTRNSAFINIFLLFNYYNNIIN 600
           R+R S F+N F+L    +NI+N
Sbjct: 119 RSRKSDFLNSFVLMQTVSNIVN 140


>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 396 LWNRNMHFNCYAEIKSMPP 340
           LW R   F  Y+E+KS+ P
Sbjct: 15  LWRRAASFTSYSELKSLTP 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,991,063
Number of Sequences: 5004
Number of extensions: 58777
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)