Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0431
         (770 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53688| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_48302| Best HMM Match : HORMA (HMM E-Value=1.1)                     28   7.3  
SB_3992| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.3  
SB_1875| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.3  
SB_58397| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_54849| Best HMM Match : HORMA (HMM E-Value=0.54)                    28   7.3  
SB_13020| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  

>SB_53688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 491

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -1

Query: 758 RPMQSFCTFLPRKERIIHQFYFILFFIDRHRHLFIF 651
           RP+   C+F    E++I+    ++FF+++H+ LF F
Sbjct: 430 RPISIICSFSKILEKLIYNQ--LIFFLEKHKILFEF 463


>SB_48302| Best HMM Match : HORMA (HMM E-Value=1.1)
          Length = 330

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -1

Query: 758 RPMQSFCTFLPRKERIIHQFYFILFFIDRHRHLFIF 651
           RP+   C+F    E++I+    ++FF+++H+ LF F
Sbjct: 269 RPISIICSFSKILEKLIYNQ--LIFFLEKHKILFEF 302


>SB_3992| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 354

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -1

Query: 758 RPMQSFCTFLPRKERIIHQFYFILFFIDRHRHLFIF 651
           RP+   C+F    E++I+    ++FF+++H+ LF F
Sbjct: 203 RPISIICSFSKILEKLIYNQ--LIFFLEKHKILFEF 236


>SB_1875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 360

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -1

Query: 758 RPMQSFCTFLPRKERIIHQFYFILFFIDRHRHLFIF 651
           RP+   C+F    E++I+    ++FF+++H+ LF F
Sbjct: 42  RPISIICSFSKILEKLIYNQ--LIFFLEKHKILFEF 75


>SB_58397| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -1

Query: 758 RPMQSFCTFLPRKERIIHQFYFILFFIDRHRHLFIF 651
           RP+   C+F    E++I+    ++FF+++H+ LF F
Sbjct: 221 RPISIICSFSKILEKLIYNQ--LIFFLEKHKILFEF 254


>SB_54849| Best HMM Match : HORMA (HMM E-Value=0.54)
          Length = 330

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -1

Query: 758 RPMQSFCTFLPRKERIIHQFYFILFFIDRHRHLFIF 651
           RP+   C+F    E++I+    ++FF+++H+ LF F
Sbjct: 269 RPISIICSFSKILEKLIYNQ--LIFFLEKHKILFEF 302


>SB_13020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 722

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -1

Query: 758 RPMQSFCTFLPRKERIIHQFYFILFFIDRHRHLFIF 651
           RP+   C+F    E++I+    ++FF+++H+ LF F
Sbjct: 417 RPISIICSFSKILEKLIYNQ--LIFFLEKHKILFEF 450


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,680,478
Number of Sequences: 59808
Number of extensions: 388057
Number of successful extensions: 616
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)