Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0431
         (770 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   4.2  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    23   4.2  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   5.5  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   5.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 67  THTIQTFRKNSSMAPMKQYANSKFVDLQEERL 162
           TH +QT  K  + AP++Q A      LQ++RL
Sbjct: 161 THLLQTADKKKASAPLQQLA------LQQQRL 186


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
 Frame = +1

Query: 1   NLYICSYLYE*TDDVSYALS*DTHTIQTFR------KNSSMAP-MKQYANSKFV 141
           N+Y  +Y+Y    +++  L  D H +  FR      K S++AP + Q    +FV
Sbjct: 40  NVYTKAYIYTIKSNMAKTLQFDVHMMLQFRYLDARLKFSNIAPYLNQIYGGQFV 93


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 360 EIKSMPPMNTNSKF*NFRFSRKPLHY 283
           E K +  ++ N  + N+  + KPLHY
Sbjct: 311 EPKIISSLSNNYNYNNYNNNYKPLHY 336


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 232 NQLVTQNNHKYICNNKGFIN 173
           N  +  NN+KY  NN  + N
Sbjct: 86  NNTIHNNNYKYNYNNNNYNN 105


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 232 NQLVTQNNHKYICNNKGFIN 173
           N  +  NN+KY  NN  + N
Sbjct: 86  NNTIHNNNYKYNYNNNNYNN 105


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 241 LRTPSITINCNTFNIVK 291
           + TP+I +   TFNI+K
Sbjct: 497 ITTPAICVGVFTFNIIK 513


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 241 LRTPSITINCNTFNIVK 291
           + TP+I +   TFNI+K
Sbjct: 550 ITTPAICVGVFTFNIIK 566


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,881
Number of Sequences: 438
Number of extensions: 4248
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)