Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0425
         (678 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   5.3  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   9.3  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    21   9.3  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 26  HKQHVLRGHKGRVRGQQRSHTHVGATE 106
           H  H L GH  RV   +R  +HV  +E
Sbjct: 532 HPFH-LHGHSFRVVAMERVGSHVNVSE 557


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/38 (23%), Positives = 15/38 (39%)
 Frame = +3

Query: 384 PAFFCDTCFRQYLYKDGTKIGEFKAYAYIGNELNPLKP 497
           P  +CD  +  Y Y+       +    + G    PL+P
Sbjct: 30  PPSYCDPWYNPYYYQYLQNAALYHKLQFRGPPRTPLQP 67


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 128 DRKISNPLPSRPRAYDCAVVHAPFPCV 48
           D++ +NPLPS  R     +V    PC+
Sbjct: 106 DQQNNNPLPSPRRVAVPVLVRDGKPCL 132


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,473
Number of Sequences: 336
Number of extensions: 2948
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)