Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0425
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    29   0.82 
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    28   1.1  
SPAC959.10 |sen15||tRNA-splicing endonuclease subunit Sen15|Schi...    28   1.4  

>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = +3

Query: 81  VIRTWARRKGIGD-FP-VQDMCSVNLEDIVIKLGHPEVY 191
           ++R+WA +  I D +P  Q +CS  L+ + +K  HP+V+
Sbjct: 306 IVRSWATQMNIMDRYPEYQFVCSQALQYLWLKEDHPDVF 344


>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +3

Query: 105 KGIGDFPVQDMCSVNLEDIVIKLGHPEVYVHQGACEHVFTFSEVRCVTVRDPLRRRH 275
           K  G  PV+D  +  L+ +++K    +   H G C  +F   E     VR  + ++H
Sbjct: 447 KAKGALPVEDFINNELDSVIMKEDEQKYRCHVGTCAKLFLGPEF----VRKHINKKH 499


>SPAC959.10 |sen15||tRNA-splicing endonuclease subunit
           Sen15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 143

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 548 VTDSVC*LFFHLTKSAKGLQGIEFVPYIGV 459
           V DS+  L   L K A+GL G EF  Y+G+
Sbjct: 89  VFDSMKKLSLPLVKDARGLSGDEFFLYLGI 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,437,293
Number of Sequences: 5004
Number of extensions: 48664
Number of successful extensions: 150
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)