Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0425
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1767 + 39766350-39766508,39766602-39766654,39766763-397668...    58   9e-09
04_04_1356 + 32854585-32854832,32854948-32855148,32855270-328554...    32   0.49 
11_01_0391 + 2949070-2950551                                           29   4.5  
11_01_0393 + 2961434-2961564,2961862-2961865,2962429-2963970,296...    28   7.9  

>01_06_1767 +
           39766350-39766508,39766602-39766654,39766763-39766829,
           39766929-39766984,39767287-39767791,39767981-39768069,
           39768678-39768768,39769052-39769177,39769256-39769513,
           39769748-39770029
          Length = 561

 Score = 57.6 bits (133), Expect = 9e-09
 Identities = 46/184 (25%), Positives = 71/184 (38%), Gaps = 31/184 (16%)
 Frame = +3

Query: 12  SGFLFINNTFYVDTREGCVDNSAVIRTWARRK-------------------------GIG 116
           SG+  I +TFY DTR   VD S  I  W +                           G+ 
Sbjct: 376 SGYFLIEDTFYNDTRRSTVDYSKPILDWIKNSRNEAEEKWDAITSGVLKKRQKDLLMGLN 435

Query: 117 DFPVQDMCSVNLE-----DIVIKLGHPEVYVHQGACEHVFTFSEVRCVTVRDPLRRRHYP 281
              V D  S  +E     D+  +LG   +Y HQG C+H+    ++R +   D   +  YP
Sbjct: 436 VSNVPDFKSAKMEKTRFSDLNFRLGAGYLYCHQGNCKHMIVIRDMRLIHPEDTQNQAEYP 495

Query: 282 CHSAVTHNQTIYCTTCAEFGAKWIVSGCRRVPFDPAFFCDTCFRQYLYK-DGTKIGEFKA 458
             +     +   C+ C  F A  +    +    +P +FCD C+    YK D + +     
Sbjct: 496 LMTFQMQRRLQKCSVCQIFHATKMTVDDKWTLNNPCYFCDKCYYLLHYKEDNSLLYHHTV 555

Query: 459 YAYI 470
           Y Y+
Sbjct: 556 YDYL 559


>04_04_1356 +
           32854585-32854832,32854948-32855148,32855270-32855447,
           32856389-32856651,32856800-32857040,32857317-32858456,
           32858856-32858993
          Length = 802

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 21/58 (36%), Positives = 24/58 (41%)
 Frame = +3

Query: 318 CTTCAEFGAKWIVSGCRRVPFDPAFFCDTCFRQYLYKDGTKIGEFKAYAYIGNELNPL 491
           CT+C  FG  WI S C+  P D    C +  R          G FK Y    NE N L
Sbjct: 397 CTSCCLFGLPWIAS-CKPCPSDTEEACPSIGRS---------GNFKKYQCAMNEYNDL 444


>11_01_0391 + 2949070-2950551
          Length = 493

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 40  FTWTQGKGAWTTAQSYARGRDGRGLEI 120
           F W   + AWT  QSY +   G G+++
Sbjct: 265 FIWDVDEAAWTKFQSYLQNMPGTGIKV 291


>11_01_0393 +
           2961434-2961564,2961862-2961865,2962429-2963970,
           2964572-2964675,2964791-2964877,2965378-2965414,
           2965729-2965801,2965963-2967494
          Length = 1169

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 40  FTWTQGKGAWTTAQSYARGRDGRGLEI 120
           F W   + AWT  QSY +   G G+++
Sbjct: 342 FIWDVDEAAWTKFQSYLQNMPGIGIKV 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,901,213
Number of Sequences: 37544
Number of extensions: 322405
Number of successful extensions: 839
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)