Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0425
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12491| Best HMM Match : rve (HMM E-Value=1.6e-18)                   29   3.5  
SB_17802| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_8504| Best HMM Match : SpoU_methylase (HMM E-Value=1.7e-28)         29   4.6  
SB_8973| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.6  
SB_49281| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_10387| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22)                   28   8.0  
SB_5526| Best HMM Match : zf-C3HC4 (HMM E-Value=2)                     28   8.0  

>SB_12491| Best HMM Match : rve (HMM E-Value=1.6e-18)
          Length = 1106

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 127 TGKSPIPFRRAHVRMTALLSTHPSLVST*NVLFMNKKPDGN 5
           TG +P+PFRR H R+      H +L +  + L     P G+
Sbjct: 246 TGAAPLPFRRRHDRLRIARRDHTALKAGLSALAPVTDPSGH 286


>SB_17802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 294 VTHNQTIYCTTCAEFGAKWIVSGCRR 371
           VTH  TI+ TTC  FG + +V  C +
Sbjct: 68  VTHLCTIFFTTCLPFGTQNLVRNCAK 93


>SB_8504| Best HMM Match : SpoU_methylase (HMM E-Value=1.7e-28)
          Length = 647

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 318 CTTCAEFGAKWIVSGCRRVPFDPAF 392
           C TC  FGAK +V G   V  DP F
Sbjct: 479 CRTCEIFGAKRLVLGSNEVMNDPYF 503


>SB_8973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -3

Query: 673 HLVTRASDVSPHLHY*I-HFSVLKLLKAIISVTKYIKKIGTLWS 545
           ++V+   DV  +LHY + HF+++++L  ++ +  Y      LWS
Sbjct: 189 NVVSVFKDVPQYLHYMLAHFAIVQVLPVVLMMVLYPSIAWKLWS 232


>SB_49281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 962

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -3

Query: 271 RRRSGSRTVTQRTSENVNTCSHAPWCTYTSG*PSLITMSSRLTEHMSWTGK 119
           +RR G+   + RTS + ++    PW + T   P+ + +S R+      TG+
Sbjct: 82  KRRQGNSAPSPRTSTSPSSSLRMPWDSPTPQTPASVRVSERIAVIEKSTGR 132


>SB_10387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 597

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 153 EDIVIKLGHPEVYVHQGACEHVFTFSEVRCVT 248
           +D V +  HP VY     C+HVF F    C++
Sbjct: 152 DDNVNRYKHPPVYNKSCTCKHVFWFKTHGCLS 183


>SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 575

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/44 (36%), Positives = 18/44 (40%)
 Frame = +3

Query: 318 CTTCAEFGAKWIVSGCRRVPFDPAFFCDTCFRQYLYKDGTKIGE 449
           C  CA  G     SG   VP D  FFC  C++    K     GE
Sbjct: 427 CFRCANCGEAIGTSGF--VPKDDTFFCPGCYQSKFSKRCASCGE 468


>SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22)
          Length = 163

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/44 (36%), Positives = 18/44 (40%)
 Frame = +3

Query: 318 CTTCAEFGAKWIVSGCRRVPFDPAFFCDTCFRQYLYKDGTKIGE 449
           C  CA  G     SG   VP D  FFC  C++    K     GE
Sbjct: 15  CFRCANCGEAIGTSGF--VPKDDTFFCPGCYQSKFSKRCASCGE 56


>SB_5526| Best HMM Match : zf-C3HC4 (HMM E-Value=2)
          Length = 106

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 180 PEVYVHQGACEHVFTF 227
           P    HQGACEHVF +
Sbjct: 87  PPTAPHQGACEHVFCY 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,671,174
Number of Sequences: 59808
Number of extensions: 393828
Number of successful extensions: 1044
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)