Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0425
         (678 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119595-1|AAM50249.1|  377|Drosophila melanogaster LD18062p pro...    93   3e-19
AE013599-597|AAM68851.1|  377|Drosophila melanogaster CG11508-PB...    93   3e-19
AE013599-596|AAF59128.3|  377|Drosophila melanogaster CG11508-PA...    93   3e-19
BT011186-1|AAR88547.1|  913|Drosophila melanogaster RE12154p pro...    31   1.4  
AE014134-3395|AAF53994.3|  913|Drosophila melanogaster CG8665-PA...    31   1.4  

>AY119595-1|AAM50249.1|  377|Drosophila melanogaster LD18062p
           protein.
          Length = 377

 Score = 93.1 bits (221), Expect = 3e-19
 Identities = 57/156 (36%), Positives = 79/156 (50%), Gaps = 7/156 (4%)
 Frame = +3

Query: 15  GFLFINNTFYVDTRE-GCVDNSAVIRTWARR-KGIGD--FPVQDMCSVNLEDIVIKLGHP 182
           G+ FIN+TFY D R     D S  +  WA R  G+      V+ M      D+ +  G P
Sbjct: 202 GYFFINDTFYNDQRNPDNPDYSKTVLQWAARANGVNGETLKVESMEGKRFIDLTVSPGSP 261

Query: 183 EVYVHQGACEHVFTFSEVRCVTV--RDPLRRRH-YPCHSAVTHNQTIYCTTCAEFGAKWI 353
             Y+H G CEH+F  S+V  +T   + P R  + YP H+  T N+   C  C      +I
Sbjct: 262 LHYLHHGNCEHLFVISQVEVLTPLSKRPDRSLYPYP-HAFSTFNRRT-CYMCGIRSYSFI 319

Query: 354 VSGCRRVPFDPAFFCDTCFRQYLYKDGTKIGEFKAY 461
           V+  RR   DP++ C  CF  + Y DG K+G+FKAY
Sbjct: 320 VNQSRRQLHDPSYLCRRCFLSFFYVDGVKLGQFKAY 355


>AE013599-597|AAM68851.1|  377|Drosophila melanogaster CG11508-PB,
           isoform B protein.
          Length = 377

 Score = 93.1 bits (221), Expect = 3e-19
 Identities = 57/156 (36%), Positives = 79/156 (50%), Gaps = 7/156 (4%)
 Frame = +3

Query: 15  GFLFINNTFYVDTRE-GCVDNSAVIRTWARR-KGIGD--FPVQDMCSVNLEDIVIKLGHP 182
           G+ FIN+TFY D R     D S  +  WA R  G+      V+ M      D+ +  G P
Sbjct: 202 GYFFINDTFYNDQRNPDNPDYSKTVLQWAARANGVNGETLKVESMEGKRFIDLTVSPGSP 261

Query: 183 EVYVHQGACEHVFTFSEVRCVTV--RDPLRRRH-YPCHSAVTHNQTIYCTTCAEFGAKWI 353
             Y+H G CEH+F  S+V  +T   + P R  + YP H+  T N+   C  C      +I
Sbjct: 262 LHYLHHGNCEHLFVISQVEVLTPLSKRPDRSLYPYP-HAFSTFNRRT-CYMCGIRSYSFI 319

Query: 354 VSGCRRVPFDPAFFCDTCFRQYLYKDGTKIGEFKAY 461
           V+  RR   DP++ C  CF  + Y DG K+G+FKAY
Sbjct: 320 VNQSRRQLHDPSYLCRRCFLSFFYVDGVKLGQFKAY 355


>AE013599-596|AAF59128.3|  377|Drosophila melanogaster CG11508-PA,
           isoform A protein.
          Length = 377

 Score = 93.1 bits (221), Expect = 3e-19
 Identities = 57/156 (36%), Positives = 79/156 (50%), Gaps = 7/156 (4%)
 Frame = +3

Query: 15  GFLFINNTFYVDTRE-GCVDNSAVIRTWARR-KGIGD--FPVQDMCSVNLEDIVIKLGHP 182
           G+ FIN+TFY D R     D S  +  WA R  G+      V+ M      D+ +  G P
Sbjct: 202 GYFFINDTFYNDQRNPDNPDYSKTVLQWAARANGVNGETLKVESMEGKRFIDLTVSPGSP 261

Query: 183 EVYVHQGACEHVFTFSEVRCVTV--RDPLRRRH-YPCHSAVTHNQTIYCTTCAEFGAKWI 353
             Y+H G CEH+F  S+V  +T   + P R  + YP H+  T N+   C  C      +I
Sbjct: 262 LHYLHHGNCEHLFVISQVEVLTPLSKRPDRSLYPYP-HAFSTFNRRT-CYMCGIRSYSFI 319

Query: 354 VSGCRRVPFDPAFFCDTCFRQYLYKDGTKIGEFKAY 461
           V+  RR   DP++ C  CF  + Y DG K+G+FKAY
Sbjct: 320 VNQSRRQLHDPSYLCRRCFLSFFYVDGVKLGQFKAY 355


>BT011186-1|AAR88547.1|  913|Drosophila melanogaster RE12154p
           protein.
          Length = 913

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = +3

Query: 231 EVRCVTVRDPLRRR--HYPC-HSAVTHNQTIYCTTCAEFGAKWIVSGCRRVPFDPAFFCD 401
           ++R +T+ DPL R   H P  H A       +C    + GAK +  GCR       FF  
Sbjct: 740 DLRTMTIGDPLDRSTAHGPQNHKAHFDKLLEFCRRGVDEGAKLVYGGCRVPNLKGYFFTP 799

Query: 402 TCF 410
           T F
Sbjct: 800 TVF 802


>AE014134-3395|AAF53994.3|  913|Drosophila melanogaster CG8665-PA
           protein.
          Length = 913

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = +3

Query: 231 EVRCVTVRDPLRRR--HYPC-HSAVTHNQTIYCTTCAEFGAKWIVSGCRRVPFDPAFFCD 401
           ++R +T+ DPL R   H P  H A       +C    + GAK +  GCR       FF  
Sbjct: 740 DLRTMTIGDPLDRSTAHGPQNHKAHFDKLLEFCRRGVDEGAKLVYGGCRVPNLKGYFFTP 799

Query: 402 TCF 410
           T F
Sbjct: 800 TVF 802


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,500,343
Number of Sequences: 53049
Number of extensions: 548486
Number of successful extensions: 1354
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1348
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2951284050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)