Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0425
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036698-1|AAB88352.1|  425|Caenorhabditis elegans Hypothetical ...   108   3e-24
AC024794-6|AAK68493.2|  425|Caenorhabditis elegans Hypothetical ...   106   1e-23
Z35603-2|CAA84674.1|  418|Caenorhabditis elegans Hypothetical pr...    95   4e-20
AC024793-4|AAF60694.2|  318|Caenorhabditis elegans Hypothetical ...    44   1e-04
Z70034-5|CAA93851.2|  197|Caenorhabditis elegans Hypothetical pr...    32   0.33 
U50069-5|AAY86213.1|  206|Caenorhabditis elegans Hypothetical pr...    31   0.76 
AF285179-1|AAG15377.1|  706|Caenorhabditis elegans zygote defect...    29   2.3  
AF003386-12|AAB54253.2|  706|Caenorhabditis elegans Zygote defec...    29   2.3  
Z71181-9|CAD44140.1|  960|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z71178-15|CAD44087.1|  960|Caenorhabditis elegans Hypothetical p...    28   7.0  
AL031632-6|CAA21008.1|  338|Caenorhabditis elegans Hypothetical ...    28   7.0  
Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AL132859-4|CAB60492.1|  365|Caenorhabditis elegans Hypothetical ...    27   9.3  

>AF036698-1|AAB88352.1|  425|Caenorhabditis elegans Hypothetical
           protein B0273.3 protein.
          Length = 425

 Score =  108 bits (260), Expect = 3e-24
 Identities = 57/160 (35%), Positives = 89/160 (55%), Gaps = 6/160 (3%)
 Frame = +3

Query: 6   FPSGFLFINNTFYVDTREG--CVDNSAVIRTWARRKG-IGDFPVQDMCSVNLEDIVIKLG 176
           +PS   FI++TFY+D+  G   VD S  IRTWA++   IG   V+ M    + D++ +LG
Sbjct: 251 WPSSMFFIHDTFYIDSNTGDQFVDPSITIRTWAKKFDYIGPMHVKQMSETRIGDLICRLG 310

Query: 177 HPEVYVHQGACEHVFTFSEVRCVTVRDPLRRR-HYPCHSAVTHNQTIYCTTCAEFGAKW- 350
            P VY+HQG CEH+  F+++ C  +RD       +P      + + I C TC E  A W 
Sbjct: 311 QPYVYIHQGVCEHLIVFNDL-C--LRDESHTNVEFPRRLVERNFRRIACDTCKEASAHWM 367

Query: 351 IVSGCRRVPFDPAFFCDTCFRQYLYK-DGTKIGEFKAYAY 467
           IV     +P  P + C +C++++ +  +G K+ +FKA  Y
Sbjct: 368 IVDHDNLLPNSPGYLCSSCYKEFCFDVNGNKVCQFKAVPY 407


>AC024794-6|AAK68493.2|  425|Caenorhabditis elegans Hypothetical
           protein Y48G1BM.1 protein.
          Length = 425

 Score =  106 bits (255), Expect = 1e-23
 Identities = 56/160 (35%), Positives = 89/160 (55%), Gaps = 6/160 (3%)
 Frame = +3

Query: 6   FPSGFLFINNTFYVDTREG--CVDNSAVIRTWARRKG-IGDFPVQDMCSVNLEDIVIKLG 176
           +PS   FI++TFY+D+  G   VD S  IR+WA++   IG   V+ M    + D++ +LG
Sbjct: 251 WPSSMFFIHDTFYIDSNTGDKFVDPSITIRSWAKKFDYIGPMHVKQMSETRIGDLICRLG 310

Query: 177 HPEVYVHQGACEHVFTFSEVRCVTVRDPLRRR-HYPCHSAVTHNQTIYCTTCAEFGAKW- 350
            P VY+HQG CEH+  F+++ C  +RD       +P      + + I C TC E  A W 
Sbjct: 311 QPYVYIHQGVCEHLIVFNDL-C--LRDESHTNVEFPRRLVERNFRRIACDTCKEASAHWM 367

Query: 351 IVSGCRRVPFDPAFFCDTCFRQYLYK-DGTKIGEFKAYAY 467
           IV     +P  P + C +C++++ +  +G K+ +FKA  Y
Sbjct: 368 IVDHDNLLPNSPGYLCSSCYKEFCFDVNGKKVCQFKAVPY 407


>Z35603-2|CAA84674.1|  418|Caenorhabditis elegans Hypothetical
           protein T02C12.2 protein.
          Length = 418

 Score = 95.1 bits (226), Expect = 4e-20
 Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 4/174 (2%)
 Frame = +3

Query: 6   FPSGFLFINNTFYVDTREGCVDNSAVIRTWARRKGIGDFPVQ--DMCSVNLEDIVIKLGH 179
           FPS F+F+++TFYVD     +D S  IR +   + I D PV+   M  V + D+ ++LG 
Sbjct: 244 FPSSFIFVHDTFYVDMPPNAIDISHPIRNFMLHREIYD-PVEACSMEGVRIIDLKLRLGQ 302

Query: 180 PEVYVHQGACEHVFTFSEVRCVTVRDPLRRRHYPCHSAVTHNQTIYCTTCAEFGAKWIVS 359
           P ++ H G CEH+  F ++R +   DP     YP       N+   C  C +   +++V 
Sbjct: 303 PYIFQHSGNCEHLLVFHDLRLLHESDPWGIDKYPFTLYEKGNEK-KCDICKKGHVEFVVE 361

Query: 360 GCRRVPFDPAFFCDTCFRQYLYKDGTKIGEFKAYAYIGNELNPLK--PFG*FRQ 515
               +P     FC TCF+++ Y  G K   F A+ Y   +    +  PFG F Q
Sbjct: 362 RHELLPNTYTHFCRTCFQEFNYVHGVKTHSFIAWPYTELQTGEQRGWPFGDFEQ 415


>AC024793-4|AAF60694.2|  318|Caenorhabditis elegans Hypothetical
           protein Y48G1BL.1 protein.
          Length = 318

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +3

Query: 312 IYCTTCAEFGAKW-IVSGCRRVPFDPAFFCDTCFRQYLYK-DGTKIGEFKAYAY 467
           I C TC E  A W IV     +P  P + C +C++++ +  +G K+ +FKA  Y
Sbjct: 247 IACDTCKEASAHWMIVDHDNLLPNSPGYLCSSCYKEFCFDVNGNKVCQFKAVPY 300


>Z70034-5|CAA93851.2|  197|Caenorhabditis elegans Hypothetical
           protein C18E9.5 protein.
          Length = 197

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +3

Query: 12  SGFLFINNTFYVDTREGCVDNSAVIRTWARRKGIGDFPVQDMCSVNLED 158
           S ++F+N+TF+VD R GC   +     + RR G     +Q   S+++E+
Sbjct: 133 SHYVFVNHTFFVD-RNGCTRQAYGYDEYLRRLGFHKIRMQRTESISVEE 180


>U50069-5|AAY86213.1|  206|Caenorhabditis elegans Hypothetical
           protein C09B9.8 protein.
          Length = 206

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 288 SAVTHNQTIYCTTCAEFGAKWIVSGCRRVPFDPAFFCDTC 407
           S+   NQ  Y      +GA W  +G  R+  +P  F D+C
Sbjct: 42  SSTADNQRCYSCMSKYYGALWRFAGYTRIYQEPGLFTDSC 81


>AF285179-1|AAG15377.1|  706|Caenorhabditis elegans zygote
           defective-1 protein.
          Length = 706

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -3

Query: 502 PKGFKGLSSFPI*AYALNSPILVPSLYRYCLKQVSQKKAGSKGTRRQPDT 353
           P G    S FP    + N P LVP    +  K  S ++A S   +R+  T
Sbjct: 572 PSGSSQTSRFPFSNLSNNQPSLVPHSAPFLTKPTSSQRASSANVQRRVST 621


>AF003386-12|AAB54253.2|  706|Caenorhabditis elegans Zygote
           defective: embryonic lethalprotein 1 protein.
          Length = 706

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -3

Query: 502 PKGFKGLSSFPI*AYALNSPILVPSLYRYCLKQVSQKKAGSKGTRRQPDT 353
           P G    S FP    + N P LVP    +  K  S ++A S   +R+  T
Sbjct: 572 PSGSSQTSRFPFSNLSNNQPSLVPHSAPFLTKPTSSQRASSANVQRRVST 621


>Z71181-9|CAD44140.1|  960|Caenorhabditis elegans Hypothetical
           protein B0024.14b protein.
          Length = 960

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 288 SAVTHNQTIYCTTCAEFGAKWIVSGCRRVPFDPAFFCDTCFRQ 416
           S   + +T  C TC +      VSGC ++  D    C+ C RQ
Sbjct: 17  SNAKNQKTTLCGTCDKDSCP-DVSGCEQLKKDQCDCCEVCIRQ 58


>Z71178-15|CAD44087.1|  960|Caenorhabditis elegans Hypothetical
           protein B0024.14b protein.
          Length = 960

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 288 SAVTHNQTIYCTTCAEFGAKWIVSGCRRVPFDPAFFCDTCFRQ 416
           S   + +T  C TC +      VSGC ++  D    C+ C RQ
Sbjct: 17  SNAKNQKTTLCGTCDKDSCP-DVSGCEQLKKDQCDCCEVCIRQ 58


>AL031632-6|CAA21008.1|  338|Caenorhabditis elegans Hypothetical
           protein Y32B12B.6 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = +3

Query: 282 CHSAVTH-NQTIY-CTTCAEFGAKWIVSGCRRVPFDPAFFCDTCFRQYLYKDGTKIGEFK 455
           CH   +  N  ++ C  C  F  +  V   R+ PF P    ++C++      G ++  F+
Sbjct: 18  CHQLTSEFNYGVHSCNACKMFIRRQAV---RKTPFKPCIQQESCYQAAPLNFGCQLCRFQ 74

Query: 456 AYAYIGNELNPL 491
               +G  + PL
Sbjct: 75  KSIEVGMNIQPL 86


>Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical
           protein C09G5.6 protein.
          Length = 948

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 98  RPRAYDCAVVHAPFPCVHVKRVVYEQETGWEH 3
           RPR YD      P P   V+   Y++ +G EH
Sbjct: 583 RPRGYDSERAEEPRPRQTVRTNTYDENSGAEH 614


>AL132859-4|CAB60492.1|  365|Caenorhabditis elegans Hypothetical
           protein Y39C12A.8 protein.
          Length = 365

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 177 HPEVYVHQGACEHVFTFSEVRCVTVRDPLRRRHYPCHSAVTHNQTIY 317
           HP+   H  A E     +    + + DP +RR Y   +A T N+ +Y
Sbjct: 55  HPDKCKHPSATEASKVVNNAFSLLM-DPAKRRQYDLQNAETSNENLY 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,517,579
Number of Sequences: 27780
Number of extensions: 280353
Number of successful extensions: 734
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)