Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0425
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g28560.1 68414.m03515 snRNA activating complex family protein...    48   8e-06
At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containi...    30   1.6  
At5g45730.1 68418.m05622 DC1 domain-containing protein contains ...    28   6.5  
At1g15690.1 68414.m01883 pyrophosphate-energized vacuolar membra...    28   6.5  
At3g54250.1 68416.m05996 mevalonate diphosphate decarboxylase, p...    27   8.6  

>At1g28560.1 68414.m03515 snRNA activating complex family protein
           similar to snRNA activating protein complex 50 kDa
           subunit (SNAPc 50 kDa subunit) (Proximal sequence
           element-binding transcription factor beta subunit)
           (PSE-binding factor beta subunit) (PTF beta subunit)
           (Swiss-Prot:Q92966) [Homo sapiens]
          Length = 375

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 29/113 (25%), Positives = 46/113 (40%)
 Frame = +3

Query: 132 DMCSVNLEDIVIKLGHPEVYVHQGACEHVFTFSEVRCVTVRDPLRRRHYPCHSAVTHNQT 311
           DM S +  DI  ++G   VY HQG C+H     ++R     D   R  YP        + 
Sbjct: 262 DMQSTHFCDIRFRVGASYVYCHQGDCKHTIVIRDMRMSHPEDVQNRAAYPI-MFWPKRRI 320

Query: 312 IYCTTCAEFGAKWIVSGCRRVPFDPAFFCDTCFRQYLYKDGTKIGEFKAYAYI 470
             C  C    A  +    +    + ++FCD CF     ++G    +F  + Y+
Sbjct: 321 QKCGVCKIKRASKVAVDDKWASENSSYFCDVCFELLHSEEGPLNCDFPVFDYV 373


>At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 612

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +3

Query: 510 RQVKKQSTYRVSDHKVPIFLMYFVTDIIALSNLRTEKCIQ*CKWGETSEAR 662
           RQ + Q   R++DH V  F +   +  I LSN+     +    WG+ SEAR
Sbjct: 419 RQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASL----WGKVSEAR 465


>At5g45730.1 68418.m05622 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 519

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/75 (22%), Positives = 34/75 (45%)
 Frame = +3

Query: 204 ACEHVFTFSEVRCVTVRDPLRRRHYPCHSAVTHNQTIYCTTCAEFGAKWIVSGCRRVPFD 383
           AC H+    ++RC ++ +P +   +P     T  +   C  C E  +++++S C    F 
Sbjct: 361 ACIHMNILFDIRCSSISEPFQHELHPHPLFRTSKEHKTCGACGE-DSEYVLS-CIVCDFA 418

Query: 384 PAFFCDTCFRQYLYK 428
               C T  R+  ++
Sbjct: 419 LGMDCATLPRKVKHR 433


>At1g15690.1 68414.m01883 pyrophosphate-energized vacuolar membrane
           proton pump / pyrophosphate-energized inorganic
           pyrophosphatase (AVP-3) identical to
           pyrophosphate-energized vacuolar membrane proton pump
           (pyrophosphate-energized inorganic pyrophosphatase)
           SP:P31414 from [Arabidopsis thaliana]
          Length = 770

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 102 RKGIGDFPVQDMCSVNLEDIVIKLGHPEVYVHQGACEHVFT 224
           + G GD+ +++   VN + +V K    +  + +GA   +FT
Sbjct: 55  KNGYGDYLIEEEEGVNDQSVVAKCAEIQTAISEGATSFLFT 95


>At3g54250.1 68416.m05996 mevalonate diphosphate decarboxylase,
           putative similar to mevalonate diphosphate decarboxylase
           [Arabidopsis thaliana] gi|2288887|emb|CAA74700
          Length = 419

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 72  NSAVIRTWARRKGIGDFPVQDMCSVNLE 155
           N AVI+ W +R  +   PV D  SV L+
Sbjct: 17  NIAVIKYWGKRDEVRILPVNDSISVTLD 44


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,796,867
Number of Sequences: 28952
Number of extensions: 258298
Number of successful extensions: 618
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)