Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0424
         (641 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    41   0.029
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    37   0.48 
UniRef50_Q8RCH7 Cluster: Imidazolonepropionase; n=3; Thermoanaer...    33   5.9  
UniRef50_P24357 Cluster: Kelch repeat protein F3; n=35; Orthopox...    33   7.7  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 40.7 bits (91), Expect = 0.029
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = -1

Query: 539 WVDELTAHLVLSGYWS 492
           WVDELTAHLVLSGYWS
Sbjct: 159 WVDELTAHLVLSGYWS 174


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 36.7 bits (81), Expect = 0.48
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 365 AGWWYLPELNHKRSYHQ*LRKL*FCGFHFYYTMCI 261
           A WWYLP   HKRSYH+   +  +CG    +  C+
Sbjct: 569 AEWWYLPARTHKRSYHR--YQCSYCGVTAAWQWCV 601


>UniRef50_Q8RCH7 Cluster: Imidazolonepropionase; n=3;
           Thermoanaerobacter|Rep: Imidazolonepropionase -
           Thermoanaerobacter tengcongensis
          Length = 415

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 12  HSLIQLFTNLPWHVITYFLTELTSKVKATWAAEYCIAKFRFREIDYEDNSRL 167
           H++ Q F   PW  +   + E+  KVK    AE+C         DYE + ++
Sbjct: 181 HAIPQEFEENPWRYVEKVINEMLPKVKEEDLAEFCDVFCEEGAFDYEQSKKI 232


>UniRef50_P24357 Cluster: Kelch repeat protein F3; n=35;
           Orthopoxvirus|Rep: Kelch repeat protein F3 - Vaccinia
           virus (strain Western Reserve / WR) (VACV)
          Length = 480

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -3

Query: 510 VKWLLELIAIYNVNAPPTLRYKF*SIKYSYNGCPTLQTETHYCFTAEIGRVV 355
           VKW+L+   I++ +  P   YK+  I+Y  N    +    H C +  +G VV
Sbjct: 224 VKWILDCTKIFHCDKQPRKSYKYPFIEYPMNMDQIIDI-FHMCTSTHVGEVV 274


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 598,503,022
Number of Sequences: 1657284
Number of extensions: 11669969
Number of successful extensions: 22915
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22915
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)