Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0424
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    28   1.00 
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    27   2.3  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    26   5.3  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    26   5.3  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   7.0  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    25   9.3  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   9.3  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    25   9.3  

>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -1

Query: 293  CGFHFYYTMCIIAS*RHSSLNPECVR*LFEGHRTKVHITYKIQSRIIFVIYFTK 132
            CG H Y + C+ A  +HSS  P C   L + +   +  +  I SR  FV  F K
Sbjct: 1107 CG-HLYCSFCLEAWLKHSSSCPMCKTKLNKNNAYYIGESRDIYSRQEFVTGFNK 1159


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = -2

Query: 493 AHSHLQRKCTSYLEI*VLKYQV*LQRLPHPSNRNALLLHGRNRQGGGTCPS*IT 332
           AH  L+R  T+  E+   +++  +  LP+  N   L LHG NR     CP  IT
Sbjct: 174 AHELLRRDMTAVAELCDDEFEEHI--LPYTGNSRGLYLHGLNR----NCPQFIT 221


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 171 FVCNVNLCSVTFKKLSHTFR 230
           ++CN   C   F K+SH F+
Sbjct: 37  YICNEEGCPAKFSKISHIFK 56


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 352 YHHPAYFCREAVMRFGLKGGAAVVTILDTLELISQ 456
           +  P+ F  E V+   L GG AVV +  TLE I Q
Sbjct: 87  FKKPSSFTGEDVVELQLHGGTAVVDV--TLEAIKQ 119


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -2

Query: 274 TRCALLHRDVTVP*TRNV*DNFLKVTEQRFT 182
           T  +LLH DV V  T NV  N  + TE +FT
Sbjct: 719 TTVSLLHGDVEVEETTNVALNNSQDTETKFT 749


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 412 PHPSNRNALLLHGRNRQGGGTCP 344
           PHP N   +LL G N Q   + P
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSP 119


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 251 TMQ*CTSCNKNETRKIIICVITG 319
           T+  CTS + NE  K+II  ITG
Sbjct: 277 TIHHCTSDSFNELEKLIISKITG 299


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 362 GWWYLPELNHKRSY 321
           GWW  PEL  +R Y
Sbjct: 562 GWWLSPELQMRRPY 575


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,462,628
Number of Sequences: 5004
Number of extensions: 48972
Number of successful extensions: 97
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)