Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0424
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45080| Best HMM Match : DAGAT (HMM E-Value=0)                       32   0.46 
SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)               31   0.80 
SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0)                     29   3.2  
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)               28   7.4  

>SB_45080| Best HMM Match : DAGAT (HMM E-Value=0)
          Length = 337

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 221 HIPGSGNCDVTMQ*CTSCNKNETRKIIICVITGGRTSCDSARAGTTTLPISA 376
           +I  SG CDVT   C    +N+     I ++ GG +    A  GT  L + A
Sbjct: 157 YIMSSGMCDVTHDSCEYILQNKGPGNSIVIVVGGASEALDAHPGTNVLTLKA 208


>SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)
          Length = 173

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 20/56 (35%), Positives = 23/56 (41%)
 Frame = +2

Query: 182 CEPLFCDLQKVISHIPGSGNCDVTMQ*CTSCNKNETRKIIICVITGGRTSCDSARA 349
           CE   C   KV   I     C    Q  T+C+K   R   IC + GGR  C   RA
Sbjct: 76  CEQKKCKGTKVCKMIGNKPRCMRPPQ--TACSKVRCRGNSICKVAGGRARCVPLRA 129


>SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 293

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/56 (33%), Positives = 22/56 (39%)
 Frame = +2

Query: 182 CEPLFCDLQKVISHIPGSGNCDVTMQ*CTSCNKNETRKIIICVITGGRTSCDSARA 349
           CE   C   KV   I     C    Q  T C++   R   IC + GGR  C   RA
Sbjct: 219 CEQKKCKGTKVCKMIGNKPRCMRPPQ--TDCSEVRCRGNSICKVAGGRARCVPLRA 272


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 206 QKVISHIPGSGNCDVTMQ*CTSCNKNETRKIIIC 307
           +K   H P +G C      CT+C+ ++ +K   C
Sbjct: 460 EKTPRHFPSNGICKSCDPGCTTCSTSDPKKCTFC 493


>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
          Length = 872

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 442 LKYQV*LQRLPHPSNRNALLLHGRNRQ 362
           L+ Q  +QR P P+ RN++ LHG   Q
Sbjct: 24  LRQQNQVQRRPEPTPRNSIFLHGLRAQ 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,734,938
Number of Sequences: 59808
Number of extensions: 380666
Number of successful extensions: 734
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)