Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0424
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83102-11|CAB05470.1|  310|Caenorhabditis elegans Hypothetical p...    30   1.6  
Z81492-11|CAB04035.1|  310|Caenorhabditis elegans Hypothetical p...    30   1.6  
AC025726-29|AAK73931.2| 1098|Caenorhabditis elegans Hypothetical...    27   8.6  

>Z83102-11|CAB05470.1|  310|Caenorhabditis elegans Hypothetical
           protein E03H4.13 protein.
          Length = 310

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
 Frame = +2

Query: 119 CQISIS*NRLRR*FEIEFCM*CEPLFCDLQKVISHIPGSGNC---DVTMQ*CTSCNKNET 289
           C++  S    RR F I  CM C   F        + P + +C   D   Q C SC  N+ 
Sbjct: 8   CRVCHSVKGTRRHFGITACMSCSSFFRRSLNCKFYCPANNSCTILDDQKQFCRSCRYNK- 66

Query: 290 RKIIICVITGGRTSC 334
                CV +G R  C
Sbjct: 67  -----CVQSGMRRDC 76


>Z81492-11|CAB04035.1|  310|Caenorhabditis elegans Hypothetical
           protein E03H4.13 protein.
          Length = 310

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
 Frame = +2

Query: 119 CQISIS*NRLRR*FEIEFCM*CEPLFCDLQKVISHIPGSGNC---DVTMQ*CTSCNKNET 289
           C++  S    RR F I  CM C   F        + P + +C   D   Q C SC  N+ 
Sbjct: 8   CRVCHSVKGTRRHFGITACMSCSSFFRRSLNCKFYCPANNSCTILDDQKQFCRSCRYNK- 66

Query: 290 RKIIICVITGGRTSC 334
                CV +G R  C
Sbjct: 67  -----CVQSGMRRDC 76


>AC025726-29|AAK73931.2| 1098|Caenorhabditis elegans Hypothetical
           protein Y71G12B.5 protein.
          Length = 1098

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 209 KVISHIPGSGNCDVTMQ*CTSCNKNETRKIIICVITG 319
           K I  +P   N   T++  TS NK + +  IIC +TG
Sbjct: 292 KTIMSLPADKNATFTLK--TSQNKGKDQITIICTVTG 326


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,991,765
Number of Sequences: 27780
Number of extensions: 292391
Number of successful extensions: 590
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)