Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0422
         (626 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    25   0.39 
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    25   0.52 
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    22   3.7  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   6.4  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    21   8.4  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   8.4  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   8.4  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +1

Query: 4   NVQVDSVCFISCRGC*-AWSLLDASRDVPNNCGFSG 108
           N++++ V    C  C  A SL++++R+VP  C F+G
Sbjct: 718 NMKLEKVPGECCAICVNATSLVESNRNVPQKCIFNG 753


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 25.0 bits (52), Expect = 0.52
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 329 LISQPIAYSAHFIKKRSPQWPVSYIALSSYITPNTYIASGP 451
           LI QP+  S    +   PQWP ++ +L    +P T   +GP
Sbjct: 64  LIPQPLHPSVP--RLGHPQWPFAWGSLXRSSSPQTSAPTGP 102


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 107 PEKPQLLGTSREASRRLQAQQPRQLIKHT 21
           PEK    G +   S   QA QP   I+H+
Sbjct: 117 PEKGGGAGAAASGSAAAQAGQPDNAIEHS 145


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 265 SNHLPR*NSSPGFDLLRFFDSFNLATYCVF 354
           S HLP+ +++  FD+ R      L T C F
Sbjct: 314 SQHLPKFSAANFFDIERSTILSVLGTACTF 343


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 392 VSYIALSSYITPNTYIASGPLGSHYLH 472
           +SYI L+S++    +I      S YLH
Sbjct: 285 LSYIILTSFLNNFYFIIFQVFESFYLH 311


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 322 DSFNLATYCVFCSFYQEALST 384
           DSF L  +  +CS  Q  LST
Sbjct: 225 DSFTLEQHRSWCSSSQPVLST 245


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/24 (29%), Positives = 17/24 (70%)
 Frame = +2

Query: 527 SSSDQEEVCPRAGDNLHRTYYLHR 598
           S+S +++   + GD+ H+T++L +
Sbjct: 258 SNSSEKKSSIQHGDDAHKTHHLDK 281


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,925
Number of Sequences: 336
Number of extensions: 2770
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)