Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0422
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    27   1.7  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.2  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   2.2  
SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual      26   5.1  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      25   6.8  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    25   9.0  

>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 417 TSLPTPTSQVALLGATTYTTPFV--QTVPIASTASLPVAA 530
           T +P P S  ++ GA+ Y+TP    QTV   +T +   AA
Sbjct: 319 TDIPPPYSTPSVAGASDYSTPSAGYQTVQTTTTTTEAAAA 358


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 417 TSLPTPTSQVALLGATTYTTPFVQTVPIASTASLPV 524
           TS  T TS     G+++ +TP   TVP  ST+S  +
Sbjct: 113 TSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSI 148



 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 417 TSLPTPTSQVALLGATTYTTPFVQTVPIASTASLPV 524
           TS  T TS     G+++ +TP   TVP  ST+S  +
Sbjct: 170 TSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSI 205



 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 417 TSLPTPTSQVALLGATTYTTPFVQTVPIASTASLPV 524
           TS  T TS +   G+++ +TP   TVP  ST+S  +
Sbjct: 227 TSCTTSTS-IPTGGSSSLSTPITPTVPPTSTSSTSI 261



 Score = 25.0 bits (52), Expect = 9.0
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
 Frame = +3

Query: 390 P*ATSLLAPTSLPTPTSQVALLGATTY------TTPFVQTVPIASTAS 515
           P +TS     S P PT+  +   +T+       TTP   TVP  ST+S
Sbjct: 265 PTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSS 312


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +2

Query: 269  TTYHGKTPLLASTSYVSSIPLISQPIAYSAHFIKKRSPQWPVSYIALSSYITPNTYIAS 445
            T  +  TP+ +ST+  +SIP+ S  +  S+  I   +     + I  SS +  +T I S
Sbjct: 1264 TVVNSSTPITSSTALNTSIPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITS 1322


>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 276

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 141 SCIPHPWSTLHRMATLISSRRGLLHM-LRISLLHHTLLFLP 260
           S I  PW T+    + ISS  GL+   L ++L+ H   ++P
Sbjct: 225 SMIVDPWGTVIAQYSDISSPNGLIFADLDLNLVDHVRTYIP 265


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +3

Query: 399 TSLLAPTSLPTPTSQVALLGATTYTTPFVQTVPIASTASLPVAAHLI 539
           +S+  P   P  +         T  TPF    PI S++S P A H +
Sbjct: 162 SSVYQPPYTPFRSVSTTSSSNDTSITPFGDQTPILSSSSDPYATHRV 208


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +3

Query: 402 SLLAPTSLPTPTSQVALLGATTYTTPFVQ----TVPIASTASLPVA 527
           S++  TS P  +S      AT  +TP       T P+ S  S+PV+
Sbjct: 89  SVVVTTSAPAASSSATSYPATFVSTPLYTMDNVTAPVWSNTSVPVS 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,315,557
Number of Sequences: 5004
Number of extensions: 42841
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)