Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0422
(626 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0546 - 34646946-34647289,34647542-34647608 30 1.7
08_01_0438 + 3852221-3853207,3853544-3854757,3855258-3855330,385... 29 2.3
03_05_0780 + 27646936-27647084,27647168-27647289,27649380-276494... 29 2.3
12_01_0030 + 262452-263210,263332-263575,263867-264165 29 4.0
01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-70... 28 5.3
01_01_0088 + 688792-691441,691629-693013 28 5.3
03_06_0419 - 33789625-33789843,33790884-33791185,33791279-33792248 28 7.0
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 27 9.2
>03_06_0546 - 34646946-34647289,34647542-34647608
Length = 136
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 187 SFH-QEEVCCTCCVYRSCIILCYFSRRSNHL 276
SFH E+ CC CCV+ C + C + HL
Sbjct: 79 SFHLPEDPCCDCCVHALC-LQCALCQEYRHL 108
>08_01_0438 +
3852221-3853207,3853544-3854757,3855258-3855330,
3856715-3856843,3857060-3857103,3857186-3857265,
3857342-3857396,3857712-3857919
Length = 929
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = +1
Query: 187 SFHQEE--VCCTCCVYRSCIILCYFSRR 264
SF+ E+ V C+CC++ SC ILC + R
Sbjct: 587 SFNPEKKTVGCSCCLFESCGILCRHALR 614
>03_05_0780 +
27646936-27647084,27647168-27647289,27649380-27649458,
27650346-27650427,27650483-27650600,27650695-27651050,
27651404-27652222,27652846-27653265,27653426-27653437
Length = 718
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +1
Query: 484 CRPCRSHRLHHFPSQLI*SRRGLPPCWRQLTP 579
CRPC SHR + R GLPP L P
Sbjct: 379 CRPCLSHRTGLLHRTRLSHRSGLPPLAAPLAP 410
>12_01_0030 + 262452-263210,263332-263575,263867-264165
Length = 433
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = -1
Query: 608 WESTGVSSRYGVSCRQHGGRPLLDQMSCDGK*CSRCD--RHGLHEGCRVGSGSQE 450
W+S S R+ S + P+ + +C G+ CS CD R LH C GS S +
Sbjct: 308 WDSQ--SGRFNKSNSKPICSPVQNYNACFGRLCSFCDEPRTILHPPCATGSHSND 360
>01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-708105,
708462-708702,708783-708857,708932-709017,709451-709523,
709637-709961,710092-711750,711938-713322
Length = 1788
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 389 PVSYIALSSYITPNTYIASGPLGSHYLH-DTLRADRADRIDCIT 517
P S + S + +A LGS+ +H DTL D +R+DCI+
Sbjct: 1293 PHSNLTELSIVNLGGGMAPSWLGSNIIHLDTLHLDGLERLDCIS 1336
>01_01_0088 + 688792-691441,691629-693013
Length = 1344
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 389 PVSYIALSSYITPNTYIASGPLGSHYLH-DTLRADRADRIDCIT 517
P S + S + +A LGS+ +H DTL D +R+DCI+
Sbjct: 849 PHSNLTELSIVNLGGGMAPSWLGSNIIHLDTLHLDGLERLDCIS 892
>03_06_0419 - 33789625-33789843,33790884-33791185,33791279-33792248
Length = 496
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 451 SWEPLPTRHPSCRPCRSHRLHHFPSQLI*SRRGLPPCWRQLTPY 582
+W+P PT P +++ H P+ + RR PP Q+ Y
Sbjct: 80 TWQPQPTTFSQANPGHAYQQDHLPA--VAGRRFFPPPAMQMQYY 121
>06_01_1032 +
8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +2
Query: 470 HDTLRADRADRIDCITSRRSSSDQEEVCPRAGDNLH 577
HD+L++D TS++SSS ++ V P+A +LH
Sbjct: 186 HDSLKSDEK------TSKKSSSKRKRVDPKAAGDLH 215
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,600,969
Number of Sequences: 37544
Number of extensions: 339621
Number of successful extensions: 1028
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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