Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0422
         (626 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11560.1 68417.m01853 bromo-adjacent homology (BAH) domain-co...    32   0.36 
At3g52890.2 68416.m05829 protein kinase (KIPK) identical to prot...    29   3.3  
At3g52890.1 68416.m05828 protein kinase (KIPK) identical to prot...    29   3.3  
At1g62340.1 68414.m07034 subtilisin-like serine protease / abnor...    28   4.4  
At1g60985.1 68414.m06865 expressed protein                             28   4.4  
At4g28570.1 68417.m04087 alcohol oxidase-related low similarity ...    28   5.8  
At5g08230.1 68418.m00965 PWWP domain-containing protein putative...    27   7.7  

>At4g11560.1 68417.m01853 bromo-adjacent homology (BAH)
           domain-containing protein contains Pfam profile PF01426:
           BAH domain
          Length = 587

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 15/48 (31%), Positives = 29/48 (60%)
 Frame = +1

Query: 184 HSFHQEEVCCTCCVYRSCIILCYFSRRSNHLPR*NSSPGFDLLRFFDS 327
           +SFH++EV     ++R C++  YF      LP+  ++PGF + + +D+
Sbjct: 195 YSFHRDEVPAESVMHR-CVV--YFVPAHKQLPKRKNNPGFIVRKVYDT 239


>At3g52890.2 68416.m05829 protein kinase (KIPK) identical to protein
           kinase KIPK (KCBP-interacting protein kinase)
           [Arabidopsis thaliana] gi|7716430|gb|AAF68383
          Length = 934

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +2

Query: 443 SGPLG-SHYLHDTLRADRADRIDCITSRRSSSDQEEVCPRAGDNLHRT-YYLHRCFPR 610
           SGP   S+ +      + + ++ C + R SS+ Q+   P+ GD+L +T  +L R  P+
Sbjct: 709 SGPYNTSNCIQPFCITEPSCQVSCFSPRLSSNQQQGRKPKRGDHLSKTQQHLSRSLPQ 766


>At3g52890.1 68416.m05828 protein kinase (KIPK) identical to protein
           kinase KIPK (KCBP-interacting protein kinase)
           [Arabidopsis thaliana] gi|7716430|gb|AAF68383
          Length = 934

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +2

Query: 443 SGPLG-SHYLHDTLRADRADRIDCITSRRSSSDQEEVCPRAGDNLHRT-YYLHRCFPR 610
           SGP   S+ +      + + ++ C + R SS+ Q+   P+ GD+L +T  +L R  P+
Sbjct: 709 SGPYNTSNCIQPFCITEPSCQVSCFSPRLSSNQQQGRKPKRGDHLSKTQQHLSRSLPQ 766


>At1g62340.1 68414.m07034 subtilisin-like serine protease / abnormal
           leaf shape1 (ALE1) identical to subtilisin-like serine
           protease [Arabidopsis thaliana] GI:16444944
          Length = 832

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = +2

Query: 290 PLLASTSY--VSSIPLISQPIAYSAHFIKKRSPQWPVSYIALSSYITPNTYIASGPLGSH 463
           P+L   S+  +S   + +  IA     IK+ +P W  + IA +   T N Y ++G + S 
Sbjct: 604 PILTGRSFAILSGTSMATPHIAGIGALIKQLNPSWTPAMIASAISTTANEYDSNGEIISA 663

Query: 464 YLHDTLRADRADRID 508
             ++  R   ++  D
Sbjct: 664 EYYELSRLFPSNHFD 678


>At1g60985.1 68414.m06865 expressed protein
          Length = 95

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +1

Query: 148 SLTLGLLYTVWLHSFHQEEVCCTCCVYRSCIILC 249
           SL L LL   W  S     + C C  Y +  ILC
Sbjct: 54  SLCLMLLAASWDESLRHSSISCNCTTYPNYKILC 87


>At4g28570.1 68417.m04087 alcohol oxidase-related low similarity to
           long chain fatty alcohol oxidase from Candida cloacae
           [GI:6983581], Candida tropicalis [GI:6983594]
          Length = 748

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -2

Query: 514 DAVDAIGTVCTKG---XXXXVAPKRATCDVGVGSDVGAKSDVAHGPLWRA 374
           D VDA+G V TKG        A +  +C +GV ++ GA  +  +G  W A
Sbjct: 657 DEVDAVGGVGTKGEYWTTYFSAHQMGSCRMGVTAEEGALDE--NGESWEA 704


>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
            transcription factor (HUA2) - Arabidopsis thaliana,
            EMBL:AF116556
          Length = 1445

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +1

Query: 460  PLPTRHPSCRPCRSHRLH--HFPSQLI*SRRGLPPCWR 567
            PLP R     P RS   H  HFPSQ +  R+ +   WR
Sbjct: 1324 PLPCRIVQSEPQRSSFPHPYHFPSQPVDGRQHMNEEWR 1361


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,612,758
Number of Sequences: 28952
Number of extensions: 246096
Number of successful extensions: 721
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)