Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0421
(749 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S... 50 5e-07
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 45 1e-05
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 44 3e-05
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 42 1e-04
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 40 4e-04
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom... 36 0.008
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 31 0.13
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 31 0.18
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce... 29 0.94
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ... 26 5.0
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 26 5.0
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 26 6.6
SPBC21H7.07c |his5||imidazoleglycerol phosphate dehydratase|Schi... 26 6.6
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 25 8.7
>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 49.6 bits (113), Expect = 5e-07
Identities = 25/68 (36%), Positives = 41/68 (60%)
Frame = +1
Query: 448 AASTNNTELVERLLKAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANPNNKDTLG 627
AAS T++V + L +G PN +DE+ +P+H A G+ D+++IL+ G + N +D G
Sbjct: 11 AASDGKTDVVLKHLDSGISPNAADENGYTPIHAAVSYGHSDLLKILVERGGDINIRDQDG 70
Query: 628 KHTSSFGC 651
+ T F C
Sbjct: 71 E-TPLFVC 77
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 45.2 bits (102), Expect = 1e-05
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +1
Query: 415 VCASRNHKLRFAASTNNTELVERLLKAGADPNCSD-EHKRSPLHLAACRGYVDVVRILLR 591
V AS N L A N E V+ LLK GA+P+ D + +PL LA+ G ++V IL+
Sbjct: 363 VDASSNTALHTAVRYNRPECVKMLLKLGANPSARDFLNSWTPLMLASATGLSEIVSILVA 422
Query: 592 HGANPNNKDTLG 627
GA+ + D+ G
Sbjct: 423 SGASVDEVDSSG 434
Score = 40.7 bits (91), Expect = 2e-04
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +1
Query: 472 LVERLLKAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANPNNKDTLGKHT 636
+VE L+ AG +PN D + LH A + V++LL+ GANP+ +D L T
Sbjct: 349 IVEELILAGFNPNEVDASSNTALHTAVRYNRPECVKMLLKLGANPSARDFLNSWT 403
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 43.6 bits (98), Expect = 3e-05
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 439 LRFAASTNNTELVERLLKAGADPNC-SDEHKRSPLHLAACRGYVDVVRILLRHGANPNNK 615
L +AA + + LL+ GAD N + + +P+H AA RG V V L++HGA+P K
Sbjct: 38 LHWAALNQQIPICKFLLEHGADVNAIGGDLQAAPIHWAAKRGSVKTVHYLVQHGADPLLK 97
Query: 616 DTLG 627
D G
Sbjct: 98 DKQG 101
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +1
Query: 439 LRFAASTNNTELVERLLKAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANP 606
L +A+ N + LL+ GAD +DE K +PLH + G + ++++L+ G P
Sbjct: 138 LMWASYHGNEPITNCLLRWGADVLATDEDKMTPLHWSIVGGNLKCMKLILKEGGIP 193
Score = 35.5 bits (78), Expect = 0.008
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 439 LRFAASTNNTELVERLLKAGA-DPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANPN 609
L AAS + V+ L+ + D N +DE + LH AA + + + LL HGA+ N
Sbjct: 4 LFLAASQGELDTVKNLISSEKIDVNATDEGGATALHWAALNQQIPICKFLLEHGADVN 61
Score = 27.1 bits (57), Expect = 2.9
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +1
Query: 364 CSTKARHCRLKHRYGGTVCASRNHKLRFAASTNNTELVERLLKAGADPNCSDEHKRSPLH 543
C H + GG + A+ H +AA + + V L++ GADP D+ + LH
Sbjct: 50 CKFLLEHGADVNAIGGDLQAAPIH---WAAKRGSVKTVHYLVQHGADPLLKDKQGFNCLH 106
Query: 544 LA 549
LA
Sbjct: 107 LA 108
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 41.5 bits (93), Expect = 1e-04
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 433 HKLRFAASTNNTELVERLLKA-GADPNCSDEHKRSPLHLAACRGYVDVVRILLRH 594
H L + N ++V+ +L D N D++K +PLHLAA G D+V LL H
Sbjct: 57 HALFISIQCANVQMVKHILSVFDVDVNAYDKNKNTPLHLAAMAGRQDIVEALLLH 111
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 538 LHLAACRGYVDVVRILLRHGANPNNKDTLGK 630
LH+A ++V+ LL +GA+P +D GK
Sbjct: 193 LHVATKAKDAELVKWLLDNGADPYRRDKFGK 223
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 39.9 bits (89), Expect = 4e-04
Identities = 25/71 (35%), Positives = 37/71 (52%)
Frame = +1
Query: 439 LRFAASTNNTELVERLLKAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANPNNKD 618
L AA+ ++V+ L+ A N SD + +PLH A G+ DV L+R GA+ KD
Sbjct: 145 LHRAAAVGKIQVVKYLISQRAPLNTSDSYGFTPLHFALAEGHPDVGVELVRAGADTLRKD 204
Query: 619 TLGKHTSSFGC 651
+ HT+ C
Sbjct: 205 S-ENHTALEVC 214
>SPBP16F5.05c |||ribosome biogenesis protein
Nop8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/55 (30%), Positives = 32/55 (58%)
Frame = +1
Query: 424 SRNHKLRFAASTNNTELVERLLKAGADPNCSDEHKRSPLHLAACRGYVDVVRILL 588
S N + +AA + E+ + LL+AG DP+ + +++SP++ A R V+ + L
Sbjct: 70 SGNTAMHWAALNGHAEICKLLLEAGGDPHIKNIYEKSPIYEADIRNQQKVMDLFL 124
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 439 LRFAASTNNTELVERLL-KAGADPNCSDEHKRSPLHLAACRGYVDVVRILL 588
L +A + EL++ ++ K + + DE+ S LH+A+ G++ VV+ ++
Sbjct: 6 LIYACRAADEELLDEIIEKCPQELSRRDENGNSGLHMASANGHIAVVQKII 56
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 31.5 bits (68), Expect = 0.13
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +1
Query: 439 LRFAASTNNTELVERLLKAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRH 594
L +A + N +LV +LL+ GADP + + ++P ++ V ++ RH
Sbjct: 437 LHYAVTQKNAKLVAKLLRNGADPAMLNGNGKTPFEISTGNKEVKDEFLIARH 488
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 523 HKRSPLHLAACRGYVDVVRILLRHGANPNNKDTLGK 630
H +PLH A + +V LLR+GA+P + GK
Sbjct: 432 HTSTPLHYAVTQKNAKLVAKLLRNGADPAMLNGNGK 467
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 31.1 bits (67), Expect = 0.18
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +1
Query: 484 LLKAGADPNCSDEHKRSPLHLAACRGYVDVVRILLRHGANPNNKDTLGK 630
L AG D N D +PLH A+ + D+ LL +GA P+ GK
Sbjct: 881 LCNAGCDVNKRDALGYTPLHYASLYDHKDICVNLLSNGAKPDVIGASGK 929
>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 28.7 bits (61), Expect = 0.94
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 373 KARHCRL-KHRYGGTVCASRNHKLRFAASTNNTELVERLLKAGADPN 510
+A +C L K T A + F+A N T+L+E +L ADPN
Sbjct: 159 RAGNCSLAKKEMEYTTSAIATNFSNFSALHNRTKLIETILNLEADPN 205
>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 445 TATCDSWMRKLFHRIYA*DGSVLLL 371
+ATC +W R L A DG+V++L
Sbjct: 416 SATCPTWRRSLSSYSVAIDGTVIML 440
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 248 SNTGLSLLSFPVSTPESVIM 189
++TGLSLLS P S P S M
Sbjct: 153 NDTGLSLLSLPKSVPHSPAM 172
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -2
Query: 265 KHISNDQTQDYRCSHFQCRLQSLSLCSFLMKYTRSSHFYV 146
K +ND+ DYR + + + + C KY S HF +
Sbjct: 94 KVTANDKHYDYRLKSHRIKDKITTKCKGTTKYFNSRHFEI 133
>SPBC21H7.07c |his5||imidazoleglycerol phosphate
dehydratase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 244 FDHSKCVLEFNLPAIPITQSGQPMPVEFLDEPHDHVGKIKC 366
F H+ C L+ L + SG+P V L + VG++ C
Sbjct: 114 FGHAYCPLDEALSRSVVDLSGRPYAVIDLGLKREKVGELSC 154
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 262 VLEFNLPAIPITQSGQPMPVEFLDEPH 342
+L+ N + +TQSG P+ + ++ E H
Sbjct: 598 ILQSNPNTVVVTQSGTPIEMPWISEAH 624
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,324,409
Number of Sequences: 5004
Number of extensions: 71282
Number of successful extensions: 195
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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