Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0419
         (393 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3; ...    36   0.37 
UniRef50_Q9AH87 Cluster: WciX; n=3; Streptococcus pneumoniae|Rep...    31   6.0  

>UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 275

 Score = 35.5 bits (78), Expect = 0.37
 Identities = 17/26 (65%), Positives = 20/26 (76%)
 Frame = +1

Query: 316 ELNQQ*SKKKKTRGGARYPIRPIVSR 393
           E NQ   + ++ RGGARYPIRPIVSR
Sbjct: 249 EFNQA-YRYRRPRGGARYPIRPIVSR 273


>UniRef50_Q9AH87 Cluster: WciX; n=3; Streptococcus pneumoniae|Rep:
           WciX - Streptococcus pneumoniae
          Length = 333

 Score = 31.5 bits (68), Expect = 6.0
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 22  STPYLKMSKILKVYIFIFMNNSKFEFNKLFVASILKEQFLL 144
           +TP   +  +L VYI++F +N K+ FN +    IL   F++
Sbjct: 129 ATPLWFLYALLYVYIYLFFSNKKWIFNTILTVIILCCSFII 169


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 319,349,291
Number of Sequences: 1657284
Number of extensions: 4535157
Number of successful extensions: 9037
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9035
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16080341554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)